Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35190 297 / 6e-103 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G28305 273 / 8e-94 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G37210 271 / 4e-93 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 268 / 1e-91 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT5G06300 258 / 6e-88 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G35990 236 / 4e-79 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G11950 228 / 4e-76 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 219 / 4e-72 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 152 / 5e-47 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 44 / 5e-05 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012500 [exp] 380 / 6e-136 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.004G181800 [exp] 325 / 8e-114 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.009G141500 [exp] 318 / 3e-111 AT4G35190 357 / 2e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.009G010800 [exp] 280 / 1e-96 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 279 / 4e-96 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 277 / 4e-95 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 273 / 9e-94 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.002G024000 [exp] 254 / 3e-86 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.016G072000 [exp] 251 / 3e-85 AT5G06300 323 / 1e-113 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003335 [exp] 315 / 8e-110 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 314 / 1e-109 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10025117 [exp] 311 / 2e-108 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10023967 [exp] 288 / 4e-99 AT4G35190 358 / 1e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 285 / 4e-98 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 284 / 5e-98 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 278 / 1e-95 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10002226 [exp] 266 / 5e-91 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 265 / 3e-90 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10024328 [exp] 260 / 2e-88 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [poplar] [flax] SLOG PF03641 [poplar] [flax] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.005G248900.1 pacid=42803507 polypeptide=Potri.005G248900.1.p locus=Potri.005G248900 ID=Potri.005G248900.1.v4.1 annot-version=v4.1 ATGGAGGATGGTAAAGTAGCGGTGAAATCATCAAGATTTAAAAGAGTTTGTGTGTTTTGTGGTAGCAGTAAAGGCAAAAGGGATTGTTATCGTGATGCTG CTCTTGAACTTGGCCAAGAACTGGTGTCAAGGAGGTTGGATCTTGTTTATGGCGGAGGAAGTGTTGGATTGATGGGGCTAGTGTCTCAAGAGGTCCATCG TGGGGGAGGACATGTAATAGGAGTCATCCCTAAAACTCTGATGAACAAAGAGCTAACAGGAGAAACAGTGGGGGAGGTCAGGCCAGTAGCGGACATGCAT CAAAGAAAAGCTGAGATGGCCCGCAATTCTGACTGTTTCATTGCCTTACCAGGTGGGTATGGAACCTTGGAGGAGTTATTGGAGGTCATTACATGGGCCC AACTTGGCATCCACGACAAGCCTGTGGGTTTGCTTAACGTGGATGGATACTACAATTACCTGCTGACTTTTATAGACAAGGCAGTGGATGATGGGTTCAT CATGCCATCTCAGCGTAGTATTATTGTCTCTGCCCCAAGTCCCAAAGAGCTTGTTCAGAAACTTGAGGAATATGTGCCTGTGCATGATGGAGTTGTTGCC AAGGCTAAGTGGGAGGCAGAACAAATGGAGCTCAATGCATCTTTGCAAACTGAAATTGCTCGTTAA
AA sequence Show only first row Show all	>Potri.005G248900.1 pacid=42803507 polypeptide=Potri.005G248900.1.p locus=Potri.005G248900 ID=Potri.005G248900.1.v4.1 annot-version=v4.1 MEDGKVAVKSSRFKRVCVFCGSSKGKRDCYRDAALELGQELVSRRLDLVYGGGSVGLMGLVSQEVHRGGGHVIGVIPKTLMNKELTGETVGEVRPVADMH QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIMPSQRSIIVSAPSPKELVQKLEEYVPVHDGVVA KAKWEAEQMELNASLQTEIAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.005G248900 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G142800 [exp]	30.14	0.6402	HGN1.1
					Potri.008G185900 [exp]	55.49	0.5434
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	62.40	0.6005
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	62.87	0.5466
AT5G54660			HSP20-like chaperones superfam...		Potri.001G416200 [exp]	77.83	0.5856
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	83.45	0.5690
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.016G138400 [exp]	86.74	0.5280	Pt-ATPK19.2
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.002G093400 [exp]	115.45	0.5486
					Potri.017G018100 [exp]	128.41	0.5457
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.013G109300 [exp]	136.28	0.5414

Compare expression of checked genes

Potri.005G248900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.