Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 154 / 2e-45 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 145 / 3e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 144 / 9e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 126 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 99 / 1e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 97 / 2e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 91 / 3e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 87 / 5e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 86 / 3e-19 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248950 [exp] 533 / 0 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 497 / 2e-180 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 431 / 4e-154 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 429 / 1e-153 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 419 / 2e-149 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 263 / 1e-87 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 255 / 9e-85 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 210 / 4e-67 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 196 / 2e-61 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023959 [exp] 166 / 2e-50 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 161 / 3e-48 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 158 / 5e-47 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 157 / 1e-46 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 155 / 3e-46 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 154 / 1e-45 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 154 / 2e-45 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 152 / 1e-44 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 148 / 3e-43 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10005000 [exp] 147 / 2e-42 AT2G17070 99 / 4e-24 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G248975.1 pacid=42803135 polypeptide=Potri.005G248975.1.p locus=Potri.005G248975 ID=Potri.005G248975.1.v4.1 annot-version=v4.1 ATGGCTGCTTGCCACATTCGCTCTATCAGCTTGCCCTCAAGATCTCACCCTCTAAATGTCAGCGTAGAAGATCAATTGGACAGGTTGAGATCATCAGAAA CAACTTCTACTTCAGTTTACCACAAATTGAGTGGCCTCAAAGTCTTGTATGAGTGTGTTGAGGATTTTCTTCAGTTGCCATTAACACAACAAACCCTCTC CAATGAACAACAAAAAGAAAGGGGAGAAGAGGTGTCGAGTGGATCTCTGCTCTTGTTGGACATGTGCAGCACAACTAGAGATGTTTTTTCATCAATTAAG GAGTGCTTGCAGGAACTTGAATCATCTCTCAGGAGGAGAAAAGGTGGAGAATCTGGATTCGCAAGTGAAGTTGAAGCTTATATTATGTCCAGGAAACAAT TAGATAAAACAATCCGCAAATGCTTCAAAAATTTGAAGAGCATGGAGAAGAACATCACTTCAGCAGTCGATGCAGTCAGCCTGCTGACAGAAGTAAAAGA AATCAGCCTCGGGATTTTCCAATCTCTCTTGTCCATGGTTTCTCAGACAAAGGCAAGATCAAGCTCCCATGGCTGGTCTGTCGTTTCAAAACTATTTCCA TCCAAACGTGTATCATGCGAAGCTGAACTCAATGAATTCAAAAAGATAGACGCCGAATTGCTTGTCCTGAAATCGAGCAAAGACATCAATTCAGTACAAG TGCAAAATGCATTGAAAGGACTGGAGGCATTAGAGTCAAACATTCAGGAAGCAGTGGAGGAGTTGGAGGCTGTTTACAGGAGATTACTGAAAACCAGAGT TACCATTCTCAACATTCTCAGCCACTAG
AA sequence Show only first row Show all	>Potri.005G248975.1 pacid=42803135 polypeptide=Potri.005G248975.1.p locus=Potri.005G248975 ID=Potri.005G248975.1.v4.1 annot-version=v4.1 MAACHIRSISLPSRSHPLNVSVEDQLDRLRSSETTSTSVYHKLSGLKVLYECVEDFLQLPLTQQTLSNEQQKERGEEVSSGSLLLLDMCSTTRDVFSSIK ECLQELESSLRRRKGGESGFASEVEAYIMSRKQLDKTIRKCFKNLKSMEKNITSAVDAVSLLTEVKEISLGIFQSLLSMVSQTKARSSSHGWSVVSKLFP SKRVSCEAELNEFKKIDAELLVLKSSKDINSVQVQNALKGLEALESNIQEAVEELEAVYRRLLKTRVTILNILSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248975 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248950 [exp]	1.00	0.9307
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	3.46	0.8889	PGIP.3
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	5.19	0.8869
AT4G27870			Vacuolar iron transporter (VIT...		Potri.001G127900 [exp]	5.65	0.8699
					Potri.001G388450 [exp]	11.66	0.8353
AT4G28650			Leucine-rich repeat transmembr...		Potri.002G256500 [exp]	12.00	0.8208
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	13.03	0.8585
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	13.56	0.7565
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012400 [exp]	14.00	0.8172
					Potri.001G388200 [exp]	15.19	0.8470

Compare expression of checked genes

Potri.005G248975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.