Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 150 / 7e-44 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 144 / 7e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 144 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 126 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 105 / 1e-26 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 93 / 4e-22 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 92 / 9e-22 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 87 / 4e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 89 / 7e-20 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248975 [exp] 488 / 6e-177 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 488 / 7e-177 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 433 / 6e-155 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 432 / 1e-154 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 416 / 2e-148 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 268 / 7e-90 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 255 / 7e-85 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 217 / 1e-69 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 201 / 2e-63 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023959 [exp] 176 / 6e-54 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 171 / 6e-52 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 164 / 1e-49 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 164 / 3e-49 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 163 / 6e-49 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 161 / 3e-48 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 161 / 3e-48 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 158 / 3e-47 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 154 / 9e-46 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 147 / 5e-43 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G249000.1 pacid=42804938 polypeptide=Potri.005G249000.1.p locus=Potri.005G249000 ID=Potri.005G249000.1.v4.1 annot-version=v4.1 ATGGCTGCTTGCCACATTCGCTCTACCAGCTTGCCCTCAAGATCTCACCCTCTAAATGTCAGTGTTGAAGATCAATTGGACAGGTTGAGATCATCACAAA CAACTTCTACGTCAGTTTACCACAAATTGAGTGGCCTCAAAGTCTTGTATGACTGTGTTGAGGATTTTCTTCAGTTGCCATTAACACAACAAACCCTCTC CAATGAACAACAAAAAGAAAGGGGAGAAGAGGTGTTGAGTGGATCTCTGCTCTTGTTGGACATGTGCAGCACAACTAGAGATGTTTTTTCATCAACGAAG GAGTGCTTGCAGGAACTTGAATCATCTCTCAGGAGGAGAAAAAGTGGAGAATCTGGATTCGCAAGTGAGGTTGAAGCTTACATGATGTGCAGGAAACGAT TAGATAAAACAATCCGCAAATGCTTCAAAAATTTGAAGAGCATGGAGAAGAACATCACTTCAGCAGTCGATGCAGTCAGCATGCTAAGAGAAGTAAAAGA AATCAGCCTTGAGATTTTCCAATCTCTCTTGTCCATGGTTTCTCAGACAAAGGCAAGATCAAGCTCCCATGGCTGGTCTGTCGTTTCAAAACTTTTTCAA TCCAAACGTGTATCATGCGAAGCTGAACTCAATGAATTCGAAAAGATAGACGCCGAATTGCTTGTCCTGAAGTCGAGCAAAGACATCAATTCAGTACAAG TGCAAAATACATTGAAAGGACTGGAGGCATTAGAGTCAACCATTCAGGAAGCAGAGGAGGAGTTGGAGGCTGTTTACAGGACATTACTGAAAACCAGAGT TACCATTCTCAACATTCTCAGCCACTAG
AA sequence Show only first row Show all	>Potri.005G249000.1 pacid=42804938 polypeptide=Potri.005G249000.1.p locus=Potri.005G249000 ID=Potri.005G249000.1.v4.1 annot-version=v4.1 MAACHIRSTSLPSRSHPLNVSVEDQLDRLRSSQTTSTSVYHKLSGLKVLYDCVEDFLQLPLTQQTLSNEQQKERGEEVLSGSLLLLDMCSTTRDVFSSTK ECLQELESSLRRRKSGESGFASEVEAYMMCRKRLDKTIRKCFKNLKSMEKNITSAVDAVSMLREVKEISLEIFQSLLSMVSQTKARSSSHGWSVVSKLFQ SKRVSCEAELNEFEKIDAELLVLKSSKDINSVQVQNTLKGLEALESTIQEAEEELEAVYRTLLKTRVTILNILSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17080			Arabidopsis protein of unknown...		Potri.005G249000 [exp]	0	1
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.005G244100 [exp]	4.24	0.9212	Pt-ATEXPA11.1,PtrEXPA18
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	4.89	0.9384
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	8.48	0.9498
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	14.21	0.9487
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	19.05	0.9455
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	29.06	0.9284
AT5G35110			unknown protein		Potri.018G113901 [exp]	31.93	0.9281
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055700 [exp]	35.51	0.9246
					Potri.019G075301 [exp]	35.69	0.9273
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Potri.010G165700 [exp]	38.57	0.9272

Compare expression of checked genes

Potri.005G249000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.