Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35230 835 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G59010 624 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G50990 616 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT3G54030 600 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 595 / 0 BSK2 BR-signaling kinase 2 (.1) AT4G00710 587 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 581 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 577 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 511 / 2e-178 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT2G17090 497 / 2e-173 SSP SHORT SUSPENSOR, Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011800 [exp] 930 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.004G182800 [exp] 863 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 856 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.014G179300 [exp] 619 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.006G093900 [exp] 619 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.009G039500 [exp] 613 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.016G105800 [exp] 613 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 611 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.003G088900 [exp] 597 / 0 AT5G46570 820 / 0.0 BR-signaling kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021823 [exp] 840 / 0 AT4G35230 802 / 0.0 BR-signaling kinase 1 (.1) Lus10003329 [exp] 718 / 0 AT4G35230 732 / 0.0 BR-signaling kinase 1 (.1) Lus10034573 [exp] 710 / 0 AT4G35230 778 / 0.0 BR-signaling kinase 1 (.1) Lus10040719 [exp] 615 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10031967 [exp] 598 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10035136 [exp] 593 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10027743 [exp] 592 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 591 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10016454 [exp] 588 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10001998 [exp] 582 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G249300.1 pacid=42803126 polypeptide=Potri.005G249300.1.p locus=Potri.005G249300 ID=Potri.005G249300.1.v4.1 annot-version=v4.1 ATGGGTTGTTGCCAATCTTCTTTTTTAAAACTACCGTTCTCCGATGATAATAAAAACAATCGACGAGAGCAAGAACAACGTCGGGAAAATCAACAGCAGC AGCAGCATGTCCGAACTAAACATTCTTCACAGCCAACAAACGGAACGGAAAAAAGCAGTGGTCTTGGTGGAGGTGGAGGTGCTGGCGTGCCGTCTTTCAC GGAGTTCTCATTTGCTGACCTAAAAGCTGCAACAAACAACTTTAGTCCCGAGTTTATCGTGTCTGAAAGCGGTGAAAAAGCGTCCAATGTTGTTTATAAA GGACGGTTACAAAATCAGAATAACAGCAATAACAGAAGTTGGATCGCTGTCAAAAAGTTTACCAAACTGGCCTGGCCTGATCCTAAACAGTTCGCTGACG AGGCGTGGGGTGTTGGGAAATTGAGGCACAAAAGGTTAGCGAATTTGATTGGTTATTGTTGTGATGGAGATGAGAGGCTGTTGGTGGCTGAATACATGCC AAATGATACCCTTTCAAAGCATCTGTTTCACTGGGAAAATCAAACTATTGAGTGGGCCATGCGTTTGAGAGTTGCACTTTATATTACTGAAGCTTTAGAT TATTGTAGTTCTGAAGGTCGTCCACTGTATCATGACTTGAACGCTTACAGGGTTCTTTTTGATGAGAATGGAGATCCCCGGCTTTCATGTTTTGGATTGA TGAAGAATAGTATGGATGGAAAGAGTTACAGCACAAATCTTGCTTATACACCTCCTGAGTACCTAAGAAATGGAAGGGTCACCCCAGAAAGTGTCATCTT CAGCTTTGGGACTGTCCTTTTGGATCTTCTTAGTGGAAAGCACATCCCTCCTAGTCATGCTCTTGATATGATTCGAGGGAAGAACATTCTTCTCCTTATG GATTCTCATTTGGAGGGAAACTTCTCAACTGAAGAGGCGACTGTGGTTTTTGATCTTGCCTCACGATGCTTGCAATACGAACCAGGGGAGCGACCAAATA CCAAGGATCTTGTTACGACACTTGCACCACTGCAAAATAAACCTGATGTTCTGTCCTATGTGATGCTGGGAATTCCAAAGCATGAAGAAGCACCCCCTAC CCCACAGCACCCCCTGTCTCCAATGGGTGATGCTTGTTCACGGATGGATCTCACAGCTATCCATCAGATATTGGTAATGACACACTACAAGGACGATGAA GGAACCAACGAGTTATCTTTCCAAGAGTGGACACAACAAATGAGAGATATGTTGGAGGCCAGAAAGCGTGGAGATGTAGCATTTCGTGACAAAGATTTTA AAACTGCTGTAGAATGCTATTCTCAGTTCATAGATGTGGGAACAATGGTATCTCCAACTGTTTATGCACGGCGTAGTCTTTGCCATCTCCTATGTGATCA ACCAGATGCCGCTCTCCGAGATGCAATGCAAGCACAATGTGTCTACCCTGACTGGTCTACAGCATTTTACATGCAAGCCGTTGCCCTTGCCAAGCTTGAC ATGCACAAGGATGCTGCTGACATGTTGAATGAGGCTGCTACCCTTGAAGAAAAAAAGCAACGGAGTGGAAGATGA
AA sequence Show only first row Show all	>Potri.005G249300.1 pacid=42803126 polypeptide=Potri.005G249300.1.p locus=Potri.005G249300 ID=Potri.005G249300.1.v4.1 annot-version=v4.1 MGCCQSSFLKLPFSDDNKNNRREQEQRRENQQQQQHVRTKHSSQPTNGTEKSSGLGGGGGAGVPSFTEFSFADLKAATNNFSPEFIVSESGEKASNVVYK GRLQNQNNSNNRSWIAVKKFTKLAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLSKHLFHWENQTIEWAMRLRVALYITEALD YCSSEGRPLYHDLNAYRVLFDENGDPRLSCFGLMKNSMDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNILLLM DSHLEGNFSTEEATVVFDLASRCLQYEPGERPNTKDLVTTLAPLQNKPDVLSYVMLGIPKHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDE GTNELSFQEWTQQMRDMLEARKRGDVAFRDKDFKTAVECYSQFIDVGTMVSPTVYARRSLCHLLCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLD MHKDAADMLNEAATLEEKKQRSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.005G249300 [exp]	0	1
AT5G25265			unknown protein		Potri.006G258800 [exp]	12.24	0.6699
AT1G48840			Plant protein of unknown funct...		Potri.012G055800 [exp]	14.69	0.6607
					Potri.003G088100 [exp]	16.73	0.6642
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.006G094700 [exp]	18.38	0.6914
AT1G71910			unknown protein		Potri.013G114000 [exp]	22.71	0.6747
AT1G29530			unknown protein		Potri.001G354600 [exp]	30.90	0.6712
					Potri.016G124300 [exp]	53.02	0.6342
AT5G45360			F-box family protein (.1)		Potri.004G236200 [exp]	62.80	0.6196
AT4G16144		AMSH3	associated molecule with the S...		Potri.010G141100 [exp]	66.09	0.6046
AT3G61180			RING/U-box superfamily protein...		Potri.014G075000 [exp]	80.90	0.6109

Compare expression of checked genes

Potri.005G249300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.