Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20530 359 / 1e-115 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 365 / 3e-115 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 342 / 1e-107 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 260 / 6e-76 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 258 / 1e-74 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 166 / 4e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 158 / 2e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 154 / 2e-39 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 152 / 2e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 152 / 2e-38 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011700 [exp] 1036 / 0 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 399 / 1e-128 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.009G142900 [exp] 394 / 1e-126 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.002G082000 [exp] 279 / 1e-82 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 278 / 2e-82 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 207 / 2e-57 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 206 / 3e-57 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 205 / 7e-57 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G077000 [exp] 185 / 1e-49 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023949 [exp] 380 / 8e-124 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 380 / 2e-121 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10012276 [exp] 353 / 2e-113 AT4G35240 248 / 7e-74 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10016004 [exp] 329 / 2e-104 AT4G35240 253 / 1e-75 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 256 / 6e-76 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 253 / 8e-74 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 186 / 2e-50 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 169 / 2e-44 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10020009 [exp] 162 / 5e-44 AT2G19090 381 / 1e-125 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 165 / 6e-43 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.005G249400.1 pacid=42805313 polypeptide=Potri.005G249400.1.p locus=Potri.005G249400 ID=Potri.005G249400.1.v4.1 annot-version=v4.1 ATGGGCTGCTCCCCTTCAAGAATTGACCAGCTCCCTGCAGTATCTCTATGCCATGACCGCTGTAAGTTCCTTGAAGAAGCTCTCTACCAAAGCTATGCCC TCGCTGATGCTCATGTTGCTTATATGCACTCCCTCAAGTCCCTTGGCCCTACCCTTCGCCGTTTCTTTGATCAAACCCTCATCAATGATCAGTCAGATTC TCAATCTAACGGCGATCCTGAAACTGTTGCTAAACTCATTAAACCCTCTTCACCTGATAACTGTCCCTCAAGTTCAACAAACTCGGAGACTTCTCACATT GATTTTCCTTCTGATTTAGAAGATGAAGAATTTAGAGACAACAAAGATTTTGATTCACTTCATACAATCCAACAAAATCAGTTTAACTCATATTCTTATG ATCATCATGACTATAATGGGTACGATTACCCAGCATGGAAAACTCCTCCACCTCCGGCTTCAAGTAGTTCAGCCTGGGATTTCTTGAATTTCTTTGAAAC ATACGAGAGATATGAATTACCAGCCAAAGATAAGGAATTTGTGAGAGAAATTCGTAGAGAAGATAAAAGTGGTAAAAGTCGAGAAGAAGATAAAAGGGGT GTGAGATTGAAAGCAGAGAAAGGTAATGGTGTGAAACGGAACAAGGTTGACGTGGTAGAAGAAAAGAAGGTTGAATCTGTGAAAGAGGAGAGTAAAGAGA GTAAAGATTTGGGTCAGCAGGCTAAAAATCAAAGTGTCTTGGAGATCATGAAGGAAGTAGAGGTCTTGTTTGACAGAGCTGCAGAGTCAGGAAATGAAGT TTTAAAGATACTTGATGCAGGGAAATTCAGATATTATTCCAAGAATTCTATCTACAAAGGAGTTTCTTCCAAGACATTGCAAACTGTTAGTCCATCTTTT TTGGAGAAGAATGGTTCTGTTCATGGGGGTTTTGGTGAGGATTTGGGTATATTTTCAGTGAATCTGTCTTCAACTCTTAGGAAGCTGTGCTTGTGGGAGA AGAAACTCTATGATGAAGTCAAGGCTGAGGAAAAATTGCGGATCATTCATGCGAAGAACTGTAGGCAGATGAACAATTTGGACGAGAAAGGTGCTGACGC CAATAAAGTTAACTCCACTCGATCTTTACTCCGGATGCTGTCTACTAAAATCAAAGTTGCCATTCAAGTAATTGACAAGATATCAACTACTATCAATAAA TTGAGGGACGAAGAGTTGTGGCCACTGATCAGTAACTTGATTGAAAAGTTACTCGGTATGTGGAAAGTTATGCTAGAATGCCACAGATGTCAGTCCCAGG CAGTTGTGGAAGCCAGGAGTTTGGATGCCATTGCATCCAATGTGAAGTTCAGTGATGCTTGTCTCGAAGCGGCGATACAACTCAAGATTGAGCTGCAAAA TTGGAACCTGTGCTTTTCCAATTGGATCAGTGCCCAAAGAGGCTATGTCAAAGCATTGAATGGTTGGCTTCTGAGATGTCTTCCATCTGAACCTGAAGAA ATGCCAGATGATGTGTCACCACTCTCCCCTGGTAGGATAGGAGCACCTCCAGTGTTTGCGTTCTGTAACCAGTGGTCACTTGCCATTGACAGGGTCTCAG AGATGGAAGTAATTTATGCAATGAATGGGTTTTTCGCTAGTGTAAATCAATACGGGGAACGGCATTGTGTCTACGTACAGCAAAGACTGACTACAGACAA GGACATGGAGAGAAAAATGAAGATCTTGGAGAGGGAGGGGCAGAGGTTGCAAAAGATGATGCAAGCTCGAGGGAAGGTGTTTCAAGCCAGTTCGGCTATG CATCAGACCAAAATGACCAACAATAGCAGTCTTCAGTTGGGTCTGAAACAAATTTTTGTAGCCATAGAGCGGTTTTCTGCTGATACCATGCATGGTTACG AGGAGCTTCATGTGCACATTGAACATAGTAGACTCAGTCAAGAGAATCCAGCAGCTCCTTAA
AA sequence Show only first row Show all	>Potri.005G249400.1 pacid=42805313 polypeptide=Potri.005G249400.1.p locus=Potri.005G249400 ID=Potri.005G249400.1.v4.1 annot-version=v4.1 MGCSPSRIDQLPAVSLCHDRCKFLEEALYQSYALADAHVAYMHSLKSLGPTLRRFFDQTLINDQSDSQSNGDPETVAKLIKPSSPDNCPSSSTNSETSHI DFPSDLEDEEFRDNKDFDSLHTIQQNQFNSYSYDHHDYNGYDYPAWKTPPPPASSSSAWDFLNFFETYERYELPAKDKEFVREIRREDKSGKSREEDKRG VRLKAEKGNGVKRNKVDVVEEKKVESVKEESKESKDLGQQAKNQSVLEIMKEVEVLFDRAAESGNEVLKILDAGKFRYYSKNSIYKGVSSKTLQTVSPSF LEKNGSVHGGFGEDLGIFSVNLSSTLRKLCLWEKKLYDEVKAEEKLRIIHAKNCRQMNNLDEKGADANKVNSTRSLLRMLSTKIKVAIQVIDKISTTINK LRDEELWPLISNLIEKLLGMWKVMLECHRCQSQAVVEARSLDAIASNVKFSDACLEAAIQLKIELQNWNLCFSNWISAQRGYVKALNGWLLRCLPSEPEE MPDDVSPLSPGRIGAPPVFAFCNQWSLAIDRVSEMEVIYAMNGFFASVNQYGERHCVYVQQRLTTDKDMERKMKILEREGQRLQKMMQARGKVFQASSAM HQTKMTNNSSLQLGLKQIFVAIERFSADTMHGYEELHVHIEHSRLSQENPAAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20530			Protein of unknown function (D...		Potri.005G249400 [exp]	0	1
AT4G11950			Protein of unknown function (D...		Potri.003G119400 [exp]	4.89	0.9343
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	5.47	0.9452	Pt-FLA11.2
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	5.65	0.9337
AT1G62981			Protein of unknown function (D...		Potri.001G112800 [exp]	6.32	0.9383
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	7.21	0.9438
AT4G14650			unknown protein		Potri.008G159200 [exp]	9.16	0.9258
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	9.16	0.9314
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Potri.019G083800 [exp]	10.19	0.9245	UBC.5
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	10.95	0.9348
AT1G16170			unknown protein		Potri.001G039700 [exp]	11.22	0.9332

Compare expression of checked genes

Potri.005G249400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.