Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76240 289 / 2e-97 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 77 / 5e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 69 / 4e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 64 / 1e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 63 / 2e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 59 / 5e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 59 / 6e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 54 / 3e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 49 / 1e-06 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011600 [exp] 484 / 2e-174 AT1G76240 295 / 9e-100 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 103 / 3e-25 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 88 / 6e-20 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 87 / 1e-19 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 86 / 2e-19 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 86 / 4e-19 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 84 / 2e-18 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 84 / 2e-18 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 83 / 3e-18 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012275 [exp] 238 / 3e-77 AT1G76240 240 / 5e-78 Arabidopsis protein of unknown function (DUF241) (.1) Lus10016005 [exp] 216 / 2e-69 AT1G76240 199 / 7e-63 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 78 / 1e-16 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 78 / 2e-16 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 78 / 2e-16 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10003332 [exp] 76 / 6e-16 AT4G35200 177 / 3e-55 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 76 / 1e-15 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 76 / 1e-15 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10022635 [exp] 75 / 2e-15 AT4G35200 175 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 74 / 3e-15 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G249500.1 pacid=42805409 polypeptide=Potri.005G249500.1.p locus=Potri.005G249500 ID=Potri.005G249500.1.v4.1 annot-version=v4.1 ATGGCGCCCGGCGTATTCAAGCGCTCTCTTTCATTTCCTAACAAAATTCCTAGCCGCACTCCATCAAAACCACCCATCTCTTACCACAATAGATCCATCA GTCTTCCATGCAGATCACACCCCTTGATTTCCCAGCTCCAAAATGAGATCGACGAGCTCAAGACTTGGTCATCGAAGCTCGAAAACCGAACTTCTGCTTG GCTTTGTGATGGCTTAAGTCGTCTTAAGGACGTTCAAGATTGTTTAGACGATATCCTTCAGCTACCTCAAACACAAGAATCTCTTCGTCGACAGCCTACA TGGGCGGAGAAGATTCTTGAAGACTTTCTTCGCTTCGTCGATGTTTATGGAATCTTCCAAACATTAGTTTTGTCAGTTAAAGACGATCAACGTGCTGCCC AGGTGGCTATAAGGAAGAAAGATGACTCAAAGATTGCTTTATGCATCAAGTCTCGCAAGAAAATGGCTAAAGAAATGGATAAACTCGTTTCCACAGTTCG ATGCATCGCACGATGCCAGTTTCCGGGATTGGATTCAGGCCTCTCTGTTGCAGATGCTGAGTTGGTTGGTGTTATTATAGATGTTATCGAAGTCAGCATG TTGGTTTCGGTTGCGCTTTTTAATGGAATCTCATTGTCATTTAAGTCAAGAAAATCGTCCTGGATTGGACTGAGGTTGCCGAAGAAGGAAAAGAAGATTA AGATTGGAGAAGGAATCCAAGAATTTCAAGAAATTGGTGTTGAGAGGTTGTGGGGATTGAGAAAGAAGGGATATGAAGAGGTGAGGATGGTTTTGAAAAG GATGCAAGACTTGGAGGAGTGTATTGGTGATATTGAAACTAGTGGCCAAAGAGTGTTTAGGAGTTTGATTAACGCTAGGGTTTCATTACTCAATAGTCTC ACGCAATAG
AA sequence Show only first row Show all	>Potri.005G249500.1 pacid=42805409 polypeptide=Potri.005G249500.1.p locus=Potri.005G249500 ID=Potri.005G249500.1.v4.1 annot-version=v4.1 MAPGVFKRSLSFPNKIPSRTPSKPPISYHNRSISLPCRSHPLISQLQNEIDELKTWSSKLENRTSAWLCDGLSRLKDVQDCLDDILQLPQTQESLRRQPT WAEKILEDFLRFVDVYGIFQTLVLSVKDDQRAAQVAIRKKDDSKIALCIKSRKKMAKEMDKLVSTVRCIARCQFPGLDSGLSVADAELVGVIIDVIEVSM LVSVALFNGISLSFKSRKSSWIGLRLPKKEKKIKIGEGIQEFQEIGVERLWGLRKKGYEEVRMVLKRMQDLEECIGDIETSGQRVFRSLINARVSLLNSL TQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76240			Arabidopsis protein of unknown...		Potri.005G249500 [exp]	0	1
AT1G76240			Arabidopsis protein of unknown...		Potri.002G011600 [exp]	1.73	0.6478
AT5G47900			Protein of unknown function (D...		Potri.001G071500 [exp]	10.81	0.6579
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.001G307800 [exp]	36.74	0.6095	N21L9
AT2G41050			PQ-loop repeat family protein ...		Potri.006G025100 [exp]	45.03	0.5611
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	52.15	0.5894
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.008G190800 [exp]	55.09	0.5519
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.003G014800 [exp]	64.59	0.5335
AT1G16630			unknown protein		Potri.001G190601 [exp]	77.03	0.5820
AT4G35220			Cyclase family protein (.1)		Potri.009G097300 [exp]	140.65	0.5479
					Potri.005G043600 [exp]	144.48	0.5068

Compare expression of checked genes

Potri.005G249500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.