Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76250 493 / 2e-173 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011400 [exp] 678 / 0 AT1G76250 506 / 1e-178 unknown protein Potri.012G136700 [exp] 190 / 6e-59 AT1G76250 66 / 3e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016006 [exp] 498 / 3e-175 AT1G76250 483 / 6e-170 unknown protein Lus10012274 [exp] 489 / 4e-172 AT1G76250 483 / 1e-169 unknown protein Lus10008273 [exp] 387 / 2e-132 AT1G76250 374 / 2e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G249600.1 pacid=42802930 polypeptide=Potri.005G249600.1.p locus=Potri.005G249600 ID=Potri.005G249600.1.v4.1 annot-version=v4.1 ATGCTGAACCAACCCCCCAAAAAAATGACCTTACCTCCCATAATCTCAAGATGGTTCTCTGATCTAGATTGGAAACCTCTCCTCTTGATCATCCCTCCTC TCTCTCTCCTCCTTTTCTTCTCTATCTCCTTAACACCCATCAACCCTTTTTCCACCCTTTCCCCTCTCGCTTCCCGTTTCTTCAACAAAACCACCCTGAT TACACTCCCCTCCACCTCCCCAACAACAAATCTTTCATCAACTGCTCACCCTAGTTCGCCGCCTGGGAATCCGAGTGACTCGACTCAGTGGAAAGATGAG CTGGATCGGTCGAGAATGGCCGTGTGTTTAGTTGGTGGGGCCAGGAGGTTTGAACTGACTGGACCCTCGATTGTGAAGAATATTTTACAAGTGTATCCAA ATTCAGACCTTTTTTTACACAGCAATTTTGACAACAATGCTTTCAAATTCACTATCTTGAAAACTGTGCCAAGGCTCGCCTCTGTCCGGATTATCATTCC TCAACCTCTGCCCGAGACCTTGCCTCAGCTCCGTGTCCTTACAGCTGCTAATTCTCCTAATGGCATCCAGGGCCTACTCCAGTACTTCAACTTAGTGGAA GGATGTCTGACAATGATCCAGGAATACCAGAACCTGAAGGGGTTCAAGTATGATTGGATAGTTCGTACGCGTGTTGACGGGTACTGGAATGCCCCGTTGG GTCCCGAAAATTTCATCCCAGGTCACTACCTGGTTCCACCAGGGTCCTCTTATGGTGGCCTTAATGACCGGCTTGGCATTGGTGATCTCAACACTTCAGC GGTGGCCCTTTCCCGTCTTTCTTTAGTTCCCCAACTTGACGCGGCCGGATTTCATCAACTCAACTCGGAAACTGCTTTCAAGGCCCAGCTTACCACACAA GGTGTGCCTTTTGATACTAGAAGATTACCCTTTTGCATTGTTTCGGATCGGAAATATGATTTTCCTCCGAGCCGTTTTGGGGTGCCGGTGGCTGCATTGT CAAGTCCAGGCCCGCTAAGTGGTGCGAAATGCAGGCCATGTAAGCCAGTTTGTGAAGGGACTTGTGTCGGTGATATCATGACATGGCTTTATAAAGATTG GAGCTGGACTAACTGGGAAAATGGGACGCTTAAGTTATGTGATGCCCATGGTGATTTGGAGGCAGGGTGGGAAAAGATTTTCGATAGAGATGCAGGGAAG GAGTTTGCCTCTGAAAGGAAGAGGATTCGGGGTCTGAACACGAAGCAATGTGCTGTTGATTTTAATGAAATGAAGAAAAGGGCTTCCATGTGGGATACTC CTCCAGTGGAGGAGATATGTAGATTAGGACTTGGAGAGAATTAG
AA sequence Show only first row Show all	>Potri.005G249600.1 pacid=42802930 polypeptide=Potri.005G249600.1.p locus=Potri.005G249600 ID=Potri.005G249600.1.v4.1 annot-version=v4.1 MLNQPPKKMTLPPIISRWFSDLDWKPLLLIIPPLSLLLFFSISLTPINPFSTLSPLASRFFNKTTLITLPSTSPTTNLSSTAHPSSPPGNPSDSTQWKDE LDRSRMAVCLVGGARRFELTGPSIVKNILQVYPNSDLFLHSNFDNNAFKFTILKTVPRLASVRIIIPQPLPETLPQLRVLTAANSPNGIQGLLQYFNLVE GCLTMIQEYQNLKGFKYDWIVRTRVDGYWNAPLGPENFIPGHYLVPPGSSYGGLNDRLGIGDLNTSAVALSRLSLVPQLDAAGFHQLNSETAFKAQLTTQ GVPFDTRRLPFCIVSDRKYDFPPSRFGVPVAALSSPGPLSGAKCRPCKPVCEGTCVGDIMTWLYKDWSWTNWENGTLKLCDAHGDLEAGWEKIFDRDAGK EFASERKRIRGLNTKQCAVDFNEMKKRASMWDTPPVEEICRLGLGEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76250			unknown protein		Potri.005G249600 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	2.23	0.9459
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	3.46	0.9364	TUB17,TUB6.1
AT1G22060			unknown protein		Potri.006G120400 [exp]	4.89	0.9342
AT3G03210			unknown protein		Potri.017G139800 [exp]	5.65	0.9270
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	7.61	0.9431
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	8.48	0.9293
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	9.16	0.9290
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	9.74	0.9337
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	9.94	0.9047
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	10.48	0.9248

Compare expression of checked genes

Potri.005G249600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.