Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20540 616 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G76260 566 / 0 DWA2 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (.1) AT1G29260 63 / 8e-11 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G16780 58 / 3e-09 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 57 / 5e-09 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT1G79990 56 / 2e-08 structural molecules (.1.2.3.4.5) AT3G16650 52 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 47 / 7e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G47990 47 / 2e-05 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT5G67320 46 / 3e-05 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011200 [exp] 670 / 0 AT1G20540 578 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 71 / 1e-13 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.011G066600 [exp] 61 / 1e-10 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G135100 [exp] 62 / 2e-10 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 59 / 3e-09 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 49 / 2e-06 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 48 / 4e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G197700 [exp] 47 / 1e-05 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G058000 [exp] 46 / 2e-05 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034576 [exp] 545 / 0 AT1G20540 522 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021818 [exp] 516 / 0 AT1G20540 499 / 4e-178 Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 69 / 7e-13 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 69 / 1e-12 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10007274 [exp] 68 / 1e-12 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 68 / 2e-12 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10014674 [exp] 52 / 2e-07 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019752 [exp] 53 / 3e-07 AT3G63460 1147 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10006916 [exp] 52 / 4e-07 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10016373 [exp] 50 / 2e-06 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G249800.4 pacid=42805461 polypeptide=Potri.005G249800.4.p locus=Potri.005G249800 ID=Potri.005G249800.4.v4.1 annot-version=v4.1 ATGCAAGGAGGATCATCAGGCATTGGCTATGGACTCAAATATCAGGCAAGGTGCATATCAGATGTGAAAGCAGACACGGATCACACCAGCTTTATCACTG GAACTCTCAGTCTCAGAGAAGAAAACGAGGTGCATTTGCTTAGGTTATCTTCAGGTGGAACTGAATTGATATGTGAAGGGTTGTTTTCGCATCCTAATGA GATCTGGGATCTCTCTTCTTGTCCTTTTGATCAACGCATTTTCTCCACTGTTTTCTCTACTGGTGAGTCATTTGGAGCCGCGGTGTGGCAGATTCCTGAG TTATATGGCCAGTTAAATTCTCCGCAATTGGAAAGGATTGCGTCTCTTGATGGACATGTTGGGAAGGTTAATTGCATTCTCTGGTGGCCATCTGGAAGAA ATGATAAGTTGATAAGCATTGATGAGGAAAATCTTTTCTTATGGAGTTTAGATTGTTCGAGAAAAGCAGCCCAGGTGCAATCGAAGGAGTCAGCAGGTAT GCTTCATTACTTATCTGGTGGAGCCTGGGATCCACATGATGTGAATGCTGTTGCAGCAACTTGTGAATCCTCTGTCCAGTTTTGGGATTTACGGACAATG AAGAAAACAAGTTCTATTGAGTGTGGCCATGTGCGCAACGTCGACTATGACACCAGGAAGATGCATATACTGGTTACTGCAGAGGATGAATCTGGGATAC ACATATGGGATCTTAGAATGCCAAAGGTTCCTATAAATGAGCTTCGTGGACATTCACATTGGACATGGGCTGTCACGTGTAACCCTGAATATGATGGACT GATTCTGAGTGGTGGTACAGACTCGACTGTCAATTTGTGGTTCGCTTCTACAACAACCAGTGATGAGTTGACATCTGGGAGTGTGGTTGCGTCACCAACT CAGAAACTTGATCCGTTGCTGTACTCATTCAATGACTACGAAGACAGTGTCTATGGGCTTGCTTGGAGTTCTCGGGAACCTTGGATTTTTGCATCTTTAT CCTATGATGGGAGGGTGGTTGTAGAATCAGTAAAGCCTTATCTCCCCAGAAAATGA
AA sequence Show only first row Show all	>Potri.005G249800.4 pacid=42805461 polypeptide=Potri.005G249800.4.p locus=Potri.005G249800 ID=Potri.005G249800.4.v4.1 annot-version=v4.1 MQGGSSGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESFGAAVWQIPE LYGQLNSPQLERIASLDGHVGKVNCILWWPSGRNDKLISIDEENLFLWSLDCSRKAAQVQSKESAGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRTM KKTSSIECGHVRNVDYDTRKMHILVTAEDESGIHIWDLRMPKVPINELRGHSHWTWAVTCNPEYDGLILSGGTDSTVNLWFASTTTSDELTSGSVVASPT QKLDPLLYSFNDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPYLPRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20540			Transducin/WD40 repeat-like su...		Potri.005G249800 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	4.89	0.8819
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	8.94	0.8954
AT2G14835			RING/U-box superfamily protein...		Potri.001G294200 [exp]	13.74	0.8869
AT5G56020			Got1/Sft2-like vescicle transp...		Potri.011G164900 [exp]	14.14	0.8720
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	15.96	0.8776
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	17.32	0.8883
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	17.83	0.8882
AT3G49720			unknown protein		Potri.009G082400 [exp]	17.83	0.8903
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.013G004400 [exp]	18.00	0.8947	ACLA.3
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	18.11	0.8890

Compare expression of checked genes

Potri.005G249800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.