Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76270 776 / 0 O-fucosyltransferase family protein (.1) AT1G20550 769 / 0 O-fucosyltransferase family protein (.1) AT4G38390 665 / 0 RHS17 root hair specific 17 (.1) AT4G16650 543 / 0 O-fucosyltransferase family protein (.1) AT5G64600 317 / 1e-101 O-fucosyltransferase family protein (.1) AT2G03280 310 / 2e-99 O-fucosyltransferase family protein (.1.2) AT5G15740 310 / 4e-99 RRT1 O-fucosyltransferase family protein (.1) AT2G01480 310 / 2e-98 O-fucosyltransferase family protein (.1) AT1G38065 306 / 6e-98 O-fucosyltransferase family protein (.1) AT1G22460 305 / 3e-96 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G011100 [exp] 957 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 700 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 692 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 568 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 566 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 313 / 4e-100 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 309 / 1e-98 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 308 / 2e-98 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 309 / 8e-98 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012270 [exp] 808 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 803 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 797 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 672 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 624 / 0 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 563 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 560 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 550 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 539 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 311 / 2e-99 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G249900.1 pacid=42805625 polypeptide=Potri.005G249900.1.p locus=Potri.005G249900 ID=Potri.005G249900.1.v4.1 annot-version=v4.1 ATGGCATTTCACCGGCGGCGCAACCACTACTACAAACGTTTCCGGTCTGTTCTGCCTTTAATATCCGCTGTTTCCGGAGTTCTTCTCATTCTCTTTGGTC TTCTCACATTTCTCGCTCCTGCACCGATTGATACTAACAATCCCCATCATAAGAACTTGATGTACACTGCAAATGATGTTGTTGAAGATACGATTGGAAA GCCTGGAGAACCTGTTCTTCACATACCGATAAAAGGGAGGAAGGATCGTGATGTTTGGAGCTCGAGAAACTCGAAATATTTCTATGGATGCAGTAATGCT AGCAACAAGTTTCCGAATGCTGATGCGATTACACATCCCAATCGGTACTTGCTGATTGCTACCAGTGGAGGCTTAAATCAGCAAAGGACTGGGATTACAG ATGCTGTTGTTGCTGCTCGTATTTTGAATGCTACTCTTGTTGTTCCAAAGCTAGATCAGAAGTCTTTTTGGAAAGATTCAAGTGATTTTTCAGAGATTTT TGATGTTGATTGGTATATTTCTTCTCTGGCAAATGATGTCAAAATCATTAAATCTCTCCCAAGAAGGAGAGGGAAAACTTGGATTCCGCGTAATATGCGT GTTCCAAGGAAGTGTAGTGAGAGATGTTATCAAAATCGTGTATTACCTGTTCTTTTAAAAAGGCATGCAATTCAGCTCACAAAGTTTGATTATAGACTCG CAAATAAGTTGGATACACAATTGCAAAAGTTGAGATGTAGAGTCAATTACCATGCTTTAAAGTTTACGGATCCTATTCTTCGAATGGGTGAGAAATTGGT CCATCGAATGCGGATGAAAAGCAAGCATTTCATTGCCTTGCACCTGAGGTTTGAACCTGATATGCTGGCATTCTCTGGATGCTATTATGGTGGAGGTGAC AAGGAAAGGAAGGAACTTGGTGCAATAAGGAAGAGGTGGAAAACTTTACATGCAAGTAACCCTGATAAGGAAAGGAGGCATGGAAAATGCCCGCTAACTC CAAAAGAAGTTGGCCTTATGTTGAGAGCACTGGGTTATGGAAGTGATGTTCATATTTACGTGGCATCTGGAGAAGTGTATGATGGGGAAGATACATTGGC ACCCTTAAAAGCACTCTTCCCAAACTTCTATACAAAAGAGACTTTAGCCAGCAAGGAGGAGCTGGAACCATTTTCTTCATTTTCTTCAAGAATGGCTGCA CTTGACTTCATTGTTTGTGATGAAAGTGATGTGTTTGTTACCAACAACAATGGTAATATGGCTAAAATATTAGCTGGACGAAGGAGATATTTTGGACACA AACCTACCATTCGTCCAAATGCTAAAAAACTGTATAGATTGTTCTTGAACCAAACTACCATGTCATGGGAAGCATTTGCCTCTAAAATGCGTACTTTCCA GAGGGGCTTCATGGGGGAGCCAAAAGAAGTCAGGCCAGGCAGGGGAGAGTTTCATGAGAACCCACACACCTGCATTTGTGAAGATTCTGAAGCCAAGGCA AAGAAAAACTCAGGACCTAGAAAATATGGGAAGGGGTATGACGCACTGGGAGATGATATACCAAGTGACTATCAGAATGTTGATGATGAGCCAGAATTGC CTGATCCTGATGATGATGGAGACCAAGATGGTCCTCAAGAGAAAGGTCAGTTCAATGAAACCGGTATGGATTATGATGAATTGACCAATGAAGAACCTGA GTTGGAAGAAATTCTTTCAGACTAG
AA sequence Show only first row Show all	>Potri.005G249900.1 pacid=42805625 polypeptide=Potri.005G249900.1.p locus=Potri.005G249900 ID=Potri.005G249900.1.v4.1 annot-version=v4.1 MAFHRRRNHYYKRFRSVLPLISAVSGVLLILFGLLTFLAPAPIDTNNPHHKNLMYTANDVVEDTIGKPGEPVLHIPIKGRKDRDVWSSRNSKYFYGCSNA SNKFPNADAITHPNRYLLIATSGGLNQQRTGITDAVVAARILNATLVVPKLDQKSFWKDSSDFSEIFDVDWYISSLANDVKIIKSLPRRRGKTWIPRNMR VPRKCSERCYQNRVLPVLLKRHAIQLTKFDYRLANKLDTQLQKLRCRVNYHALKFTDPILRMGEKLVHRMRMKSKHFIALHLRFEPDMLAFSGCYYGGGD KERKELGAIRKRWKTLHASNPDKERRHGKCPLTPKEVGLMLRALGYGSDVHIYVASGEVYDGEDTLAPLKALFPNFYTKETLASKEELEPFSSFSSRMAA LDFIVCDESDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNAKKLYRLFLNQTTMSWEAFASKMRTFQRGFMGEPKEVRPGRGEFHENPHTCICEDSEAKA KKNSGPRKYGKGYDALGDDIPSDYQNVDDEPELPDPDDDGDQDGPQEKGQFNETGMDYDELTNEEPELEEILSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	0	1
AT2G05755			Nodulin MtN21 /EamA-like trans...		Potri.014G157700 [exp]	7.21	0.7949
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	7.34	0.8096
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Potri.002G121000 [exp]	8.71	0.7638
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	9.32	0.8125
AT1G34270			Exostosin family protein (.1)		Potri.019G086800 [exp]	13.41	0.7975
AT2G28580			Plant protein of unknown funct...		Potri.014G054200 [exp]	16.24	0.7281
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	17.08	0.8119
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.008G060700 [exp]	20.61	0.7793
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165400 [exp]	22.49	0.7986
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	23.87	0.7935

Compare expression of checked genes

Potri.005G249900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.