Plant FIBer expression Database

Potri.005G250000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63610 440 / 9e-156 unknown protein
AT5G14970 90 / 4e-20 unknown protein
AT2G14910 84 / 6e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G011000
[exp]
530 / 0 AT1G63610 431 / 3e-152 unknown protein
Potri.001G298200
[exp]
92 / 2e-20 AT2G14910 419 / 1e-145 unknown protein
Potri.009G092800
[exp]
84 / 8e-18 AT2G14910 421 / 9e-147 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016008
[exp]
408 / 5e-143 AT1G63610 409 / 1e-143 unknown protein
Lus10030753
[exp]
394 / 1e-137 AT1G63610 397 / 6e-139 unknown protein
Lus10013233
[exp]
392 / 2e-136 AT1G63610 389 / 1e-135 unknown protein
Lus10026601
[exp]
90 / 1e-19 AT2G14910 396 / 9e-137 unknown protein
Lus10013888
[exp]
79 / 5e-16 AT2G14910 380 / 8e-130 unknown protein
Lus10014506
[exp]
61 / 4e-10 AT5G14970 329 / 5e-111 unknown protein
Lus10032180
[exp]
51 / 8e-07 AT5G14970 327 / 4e-111 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05542 DUF760 Protein of unknown function (DUF760)
Representative CDS sequence
>Potri.005G250000.1 pacid=42802868 polypeptide=Potri.005G250000.1.p locus=Potri.005G250000 ID=Potri.005G250000.1.v4.1 annot-version=v4.1
ATGGATTCTTTGACAGCAAAGGGCTCTTTCTTTGTATCTAAATTGTCTTCCTCTTCTTCTTCGAACAGTTCAACAGTTCTTGTCTCGACTCGACCTCGAC
TATGTTCTTCAGTTAGTTTTCCAAGAAACAAGGAGAAGTACTGTAATAATGGGAGGTTAGGCTTTAGAGTTAAAGCTTACGATTCTTCCAAGGACGACTC
TTCTTCCAATAATAAATCTGGTGATGCCAAGCCCCCTAATGGCAGTGTGCAGCCAAAGAACAGGAGGGAAATTCTATTGGAATATGTCAAAAATGTGCAG
CCTGAGTTTATGGAGCTTTTTGTAAAGCGAGCACCACCGCAGGTAGTTGATGCGATGCGACAGACAGTGACTAACATGATTGGGACGCTACCTCCACAGT
TTTTCGCTGTAACAATTACAACTGTAGCTGAGAATCTTGCGCAGCTCATGTATAGTGTTATGATGACGGGCTATATGTTCAAGAATGCACAACACCGGCT
GGAGTTGCAACAAAGTTTGGAGCAGGTTGCACTTCCTGATGCACAAGAAGAAAAGAAGGATGAGCCAGATTATGCACCTGGTACACAGAAGAATGTGTCT
GGTGAAGTTCTTAGGTGGAATAATGTTTCTGGTCCTGAAAGAATTGATGCTAAAAAATACATCGAGTTACTTGAAGCGGAAATAGAGGAACTCAATAGTC
AAGTTGGTAGAAAAACTGCAAATGGACAAAATGAATTATTGGAATATCTCAAGTCTCTTGAGCCCCAAAATCTGAAGGATTTGACAAGTAGTGCTGGAGA
GGATGTTGTTCTTGCAATGAACACGTTCATCAAGCGCCTTCTGGCTGTTTCAGGTCCCGACCAGATGAAGACATCTGTAACAGAGACTAGTGCACCAGAG
CTTGCCAAGCTGCTCTATTGGCTAATGGTGGTTGGGTATAGCGTTCGTAACATTGAAGTCCGTTTTGACATGGAGCGAGTACTCGGGGTACCTCCAAAGC
TTGCAGAGTTACCTCCTGGAGAAAATGTTTAA
AA sequence
>Potri.005G250000.1 pacid=42802868 polypeptide=Potri.005G250000.1.p locus=Potri.005G250000 ID=Potri.005G250000.1.v4.1 annot-version=v4.1
MDSLTAKGSFFVSKLSSSSSSNSSTVLVSTRPRLCSSVSFPRNKEKYCNNGRLGFRVKAYDSSKDDSSSNNKSGDAKPPNGSVQPKNRREILLEYVKNVQ
PEFMELFVKRAPPQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSVMMTGYMFKNAQHRLELQQSLEQVALPDAQEEKKDEPDYAPGTQKNVS
GEVLRWNNVSGPERIDAKKYIELLEAEIEELNSQVGRKTANGQNELLEYLKSLEPQNLKDLTSSAGEDVVLAMNTFIKRLLAVSGPDQMKTSVTETSAPE
LAKLLYWLMVVGYSVRNIEVRFDMERVLGVPPKLAELPPGENV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G63610 unknown protein Potri.005G250000
[exp]
0 1
AT4G36810 GGPS1 geranylgeranyl pyrophosphate s... Potri.005G127100
[exp]
5.29 0.9300 Pt-GGPS1.2
AT3G03190 ATGSTF6, ATGSTF... ARABIDOPSIS GLUTATHIONE-S-TRAN... Potri.002G015200
[exp]
16.06 0.8391
AT5G64050 ATERS, ERS, OVA... OVULE ABORTION 3, glutamate tR... Potri.009G169700
[exp]
16.76 0.8367
AT5G08740 NDC1 NAD(P)H dehydrogenase C1 (.1) Potri.007G098700
[exp]
19.67 0.9084
AT5G35220 EGY1 ETHYLENE-DEPENDENT GRAVITROPIS... Potri.013G064700
[exp]
21.11 0.9241
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.018G106400
[exp]
21.63 0.9155
AT2G28605 Photosystem II reaction center... Potri.007G100800
[exp]
27.49 0.8835
AT5G15802 unknown protein Potri.017G099600
[exp]
33.25 0.9135
AT5G49890 ATCLC-C, CLC-C chloride channel C (.1) Potri.004G228300
[exp]
33.63 0.8900 CLC.4
AT1G11930 Predicted pyridoxal phosphate-... Potri.004G006600
[exp]
42.98 0.8948

Potri.005G250000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.