Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42440 1074 / 0 unknown protein AT1G06720 79 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017700 [exp] 77 / 4e-14 AT1G06720 742 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013232 [exp] 1095 / 0 AT1G42440 1082 / 0.0 unknown protein Lus10030752 [exp] 1067 / 0 AT1G42440 1069 / 0.0 unknown protein Lus10007980 [exp] 80 / 5e-15 AT1G06720 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013507 [exp] 79 / 9e-15 AT1G06720 1225 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [poplar] [flax] EFTPs PF04950 [poplar] [flax] RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal CL0575 [poplar] [flax] PF08142 [poplar] [flax] AARP2CN AARP2CN (NUC121) domain
Representative CDS sequence Show only first row Show all	>Potri.005G250100.1 pacid=42803221 polypeptide=Potri.005G250100.1.p locus=Potri.005G250100 ID=Potri.005G250100.1.v4.1 annot-version=v4.1 ATGGGAGGATCCAGAGCTCAGCTAAACAAACCTCACAAGTCTCGCTTCTCCACTAAATCTTCCCGCAACCTTCACAAAACTTCCCTTAAAGACAAGAGTA GAATCGCAAAATCGGAGCGCAATGTCGCCAAGGGAGCACGAGCTGCTCGGCTTCAGCGTAACAAGATGTTGCGAGAGCAGAAAAAGGCGGCACTTTTGAA AGAAAAAAGAGCTTCGAGTTCTTCCACGAGCGCTCCCCTTGTAATTCTTCTTTTTGGCCTTTCTGCATCTGTAAATGTAGAGTCGCTTGCTGAAGATCTT TTGAGAGTGTTATCCAATGATGGTGCTGGAGATGTTTCTTCAACAGTTGCTTCCTCTGAATACAAAATGAGGATCACAGTATTGAAAGCGCCTCATGGGA ATTTGTTGTCCTGTATGGAAATGGCCAAGGTTGCTGATCTAATTGCTTTTGTGGCTTCCACTAACTCATTATATGAAGAAAATGCCTCTGATTTCGGATA TATTGATTCATTTGGAAGTCAATGCTTGTCTGTGTTCAGGCAACTTGGCCTGCCTAATACTGTTGTATTCCTTCGTGATCTACCTAGTGATCTGAAAGGG AAAAATGAACTAAAGAAGATGTCTATTTCTAACCTTGCTGGTGAGTTTCCTGAAGATTGTAAGTTCTATCCAGCAGATACAAAAGATGAGTTGCACAAGT TTCTTTGGCTATTTAAGGAGCAAAGGCTCACAGTTCCTCACTGGAGAAACCAAAGGCCTTACCTGATGTCTCAAAAGGTGGATGTGGTAGCAGATGAATT GAACTCAGGAAAATGCACCCTTCTTCTTACTGGTTATCTACATGCTCACAGTCTCTCAGTTAACCAGCTGGTTCATGTTTCTGGTGCGGGAGATTTCCAG CTACAGAAAATTGAAATTCTGAAGGATCCAAATCCATTGAAGTTAAGGAAAGAATCGGATGCAATGGATTCAGATGATGTGATTGATGTGGAGGTAGTTC GTTCATTGGATCCTGATTCCATGACACAGGAGCCATTGGTTGTTGAAAATGTTCTGGATCCTCTTGCAGGTGAACAGACCTGGCCAACAGAAGCTGAAAT GGACGAGGCTGATAGAAATCAGAAACAAAAGAGGTTAAAGAAGAGGATTCTTCCTCGAGGTACTTCAGAATACCAGGCTGCTTGGATCTTGGATGAAACA GATGATGAGGGTTCAGCTAGTGGCAGTGATACTGATGATGGGATGGTATTGGATGAAACAGAAGGTTATTTTCGTGGTCCCAAGGAAACAAATAACTCAG ACGTTGATGATGATGATCAAGCTTCTCTGGATGATAGGGACGCCGATGAAGAAACTGACACAGATTCAGTGATGATGGAAGATGATAACTTGACTAAGGA ACAGATAGAGGAAGAGATTAAAAAAATCAAAGCAGCGCATGCAGAAGATGAGGAATATCCAGATGAAGTGGATACTCCATTGGACAATCCTGCTAGAAAA CGTTTCACCAAATATAGAGGTCTCAAGTCATTCAGGACCTCTTCATGGGACCCAAAGGAGTCTCTACCTCCAGAATATGCCAGAATTTTTGCATTTGATA AATTTGCAAAAACACAAAAACATGTCATTGCAAAATTCTTAGATATGGAGCAAGAGAACAGGTATGACTGTGTACCAGCGGGCCAATATGCAAGGCTTCA TATCAAGGAAGTACCTACTCCTGTTGCTTCCAAGTTATGTTTGCTTGCAAAGACAGTGCCAATAATAGCATCTGGCCTTTTTCAGCATGAATCCAAGATG TCTGTTCTTCATTTTAGTATCAAGAAGCATGATACCTATGATGCTCCTATCAAAGCCAAAGAAGAACTAGTATTTCATGTTGGTTTTCGGCAATTTGTTG CTAGGCCTGTATTTTCCACTGATGATATGAATTCTGACAAGCACAAGATGGAGAGGTTCCTTCATGCAGGGCGTTTTTCTGTCGCATCAATTTATGCTCC TATTTCGTTTCCTCCTCTTCCGTTGATAGTCTTGAAGAGTGCAGAAGGAAGTGCTGCCCCCGCTATTGCAGCTGTTGGTTCTTTGAGAAGCATTGACCCA GATAGGATAATCCTGAAGAAGATTGTATTAACTGGTTACCCTCAACGAGTATCAAAGTTGAAAGCCTCTGTAAGATACATGTTCCATAGCCCAGAAGATG TAAGATGGTTTAAGCCTGTGGAAGTGTATACGAAATGCGGTCGCCATGGTCGAATTAAGGAACCTGTTGGCACACATGGGGCTATGAAATGCACTTTTAA TGGGGTCCTTCAGCAGCACGACACTGTTTGCATGAGCTTGTACAAACGTGCATATCCCAAGTGGCCAGAACACAGGTTCCCGATTCTTGATACTTGA
AA sequence Show only first row Show all	>Potri.005G250100.1 pacid=42803221 polypeptide=Potri.005G250100.1.p locus=Potri.005G250100 ID=Potri.005G250100.1.v4.1 annot-version=v4.1 MGGSRAQLNKPHKSRFSTKSSRNLHKTSLKDKSRIAKSERNVAKGARAARLQRNKMLREQKKAALLKEKRASSSSTSAPLVILLFGLSASVNVESLAEDL LRVLSNDGAGDVSSTVASSEYKMRITVLKAPHGNLLSCMEMAKVADLIAFVASTNSLYEENASDFGYIDSFGSQCLSVFRQLGLPNTVVFLRDLPSDLKG KNELKKMSISNLAGEFPEDCKFYPADTKDELHKFLWLFKEQRLTVPHWRNQRPYLMSQKVDVVADELNSGKCTLLLTGYLHAHSLSVNQLVHVSGAGDFQ LQKIEILKDPNPLKLRKESDAMDSDDVIDVEVVRSLDPDSMTQEPLVVENVLDPLAGEQTWPTEAEMDEADRNQKQKRLKKRILPRGTSEYQAAWILDET DDEGSASGSDTDDGMVLDETEGYFRGPKETNNSDVDDDDQASLDDRDADEETDTDSVMMEDDNLTKEQIEEEIKKIKAAHAEDEEYPDEVDTPLDNPARK RFTKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFAKTQKHVIAKFLDMEQENRYDCVPAGQYARLHIKEVPTPVASKLCLLAKTVPIIASGLFQHESKM SVLHFSIKKHDTYDAPIKAKEELVFHVGFRQFVARPVFSTDDMNSDKHKMERFLHAGRFSVASIYAPISFPPLPLIVLKSAEGSAAPAIAAVGSLRSIDP DRIILKKIVLTGYPQRVSKLKASVRYMFHSPEDVRWFKPVEVYTKCGRHGRIKEPVGTHGAMKCTFNGVLQQHDTVCMSLYKRAYPKWPEHRFPILDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G42440			unknown protein		Potri.005G250100 [exp]	0	1
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Potri.002G241100 [exp]	3.00	0.8330
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	3.46	0.8415
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	4.47	0.8307
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.005G093100 [exp]	4.58	0.8222
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	5.65	0.8336
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	7.41	0.8289
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	7.48	0.8129
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	8.30	0.7801
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Potri.001G334900 [exp]	9.11	0.6923
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	10.39	0.8060

Compare expression of checked genes

Potri.005G250100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.