Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42320 606 / 0 Zn-dependent exopeptidases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010800 [exp] 754 / 0 AT5G42320 607 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016010 [exp] 639 / 0 AT5G42320 611 / 0.0 Zn-dependent exopeptidases superfamily protein (.1) Lus10012267 [exp] 577 / 0 AT5G42320 583 / 0.0 Zn-dependent exopeptidases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF00246 [poplar] [flax] Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.005G250300.1 pacid=42803729 polypeptide=Potri.005G250300.1.p locus=Potri.005G250300 ID=Potri.005G250300.1.v4.1 annot-version=v4.1 ATGGCTTCTCTCCTCCCACTCTTCATTTTCGCTTCTCTTTCACTCGTTAATGCTAAATCTAATTCCACTTTCACTCCCATCAATCGCGATCTCTACCACT CCAGCGCTGATTTGTTGGAGCAAATAAAGGCATTGGTACACCGTCACCCAGACAAACTTACCGTGGAGACAATTAAAACAGGAAACAGGGGTTATAAAGC GGAGATTAGTGTAGTTACTTATTGCAGAAGTAGAAAAGAAGCTGATGACAGGACGAAGTTTCGGATTCTTCTTAGTTTCGGGCAACATGGGAGGGAGCTA ATTACAACAGAACTTGCATTCCGGATCTTGTCGATTTTAAGTGAGGAACAGTTTCTACCCGATGTAGATGCTGCTTCTTTGAATAATATCCTAGACAAGC TCGTCATAAAGGTGGTGCCAATGGAAAATGTGAATGGACGGAAACTTGTTGAAGGAGGAGATCTTTGTGAGAGGAGGAATGGTAGAGGAGTTGATCTCAA CCGGAATTGGAGTGTTGATTGGGGCAAAAAGGAGAAGGACTATGATCCATATGAAGAAAATCCTGGAACTGGTCCTTTTAGTGAGCCTGAAACTCAAATA ATGCGGAAACTCGCCTTAACATTCGATCCTCACATATGGGTTAATGTGCATTCGGGAATGGAGGCATTATTCATGCCTTACGACCACAGGAATACAACCC CTGATGGTGCACCATCAGAACAGATGAGGTCATTGCTTAGTAAACTGAACAATGTTCATTGCCACAAGCATTGTGTGATTGGTTCGGGAGGAGGCTCTGT TGGGTATCTTGCACATGGGACAGCAACAGATTTCATGTACGAAGTTGTAAAAGTGCCTATGGCCTTCACCTTTGAGATTTACGGAGATACCGCAGCTTCA TCAAAGGACTGCTTTAAAATGTTCAATCCTGTTGATTTTACTACCTTCCATAGAGTTCTCAATGACTGGTCCTCTTCTTTCTTCACAATTTTTAAGCTGG GACCGCACCAGCTAGATGGAAACAGTTCAAAGGAGATGGCATCCAGTTTGGACAAGCTTGTATCGATTGATGAGTATCTTGACGGGTACTTGGTGGAGAG GAGAAATAGATATGGTAAAAAGATGGAGGTGCTAGATGTTGGGATGCAGGAGATAAGGACGTATTTTAGGCTTTTCTTATTATCATCAGTTTTGTTATTG TTCATGTTCTGTTCTAGAATTGCAAGGAGCAAGTCCAGTAGACCTATTGTTTCAGCCTTACCCGTCTGA
AA sequence Show only first row Show all	>Potri.005G250300.1 pacid=42803729 polypeptide=Potri.005G250300.1.p locus=Potri.005G250300 ID=Potri.005G250300.1.v4.1 annot-version=v4.1 MASLLPLFIFASLSLVNAKSNSTFTPINRDLYHSSADLLEQIKALVHRHPDKLTVETIKTGNRGYKAEISVVTYCRSRKEADDRTKFRILLSFGQHGREL ITTELAFRILSILSEEQFLPDVDAASLNNILDKLVIKVVPMENVNGRKLVEGGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTGPFSEPETQI MRKLALTFDPHIWVNVHSGMEALFMPYDHRNTTPDGAPSEQMRSLLSKLNNVHCHKHCVIGSGGGSVGYLAHGTATDFMYEVVKVPMAFTFEIYGDTAAS SKDCFKMFNPVDFTTFHRVLNDWSSSFFTIFKLGPHQLDGNSSKEMASSLDKLVSIDEYLDGYLVERRNRYGKKMEVLDVGMQEIRTYFRLFLLSSVLLL FMFCSRIARSKSSRPIVSALPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42320			Zn-dependent exopeptidases sup...		Potri.005G250300 [exp]	0	1
AT4G37190			unknown protein		Potri.001G361900 [exp]	8.12	0.7189
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	9.89	0.7325
AT3G25680			unknown protein		Potri.010G131000 [exp]	12.48	0.6360
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.016G088300 [exp]	24.91	0.6353
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.008G142700 [exp]	26.83	0.6921
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	27.34	0.7144
AT5G17440			LUC7 related protein (.1)		Potri.019G055000 [exp]	31.46	0.6702
AT5G63200			tetratricopeptide repeat (TPR)...		Potri.012G092000 [exp]	37.22	0.6651
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	41.85	0.6411
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.002G205800 [exp]	45.71	0.6219

Compare expression of checked genes

Potri.005G250300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.