Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 330 / 3e-107 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 281 / 4e-89 Flavin-binding monooxygenase family protein (.1) AT1G65860 69 / 4e-12 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G62560 66 / 4e-11 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G12160 65 / 5e-11 Flavin-binding monooxygenase family protein (.1) AT2G33230 62 / 6e-10 YUC7 YUCCA 7 (.1) AT4G28720 59 / 3e-09 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G62620 59 / 4e-09 Flavin-binding monooxygenase family protein (.1) AT1G12200 59 / 4e-09 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G63370 58 / 1e-08 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143500 [exp] 568 / 0 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 531 / 0 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 531 / 0 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 399 / 1e-135 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 350 / 5e-115 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 337 / 1e-109 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.006G248200 [exp] 69 / 3e-12 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 68 / 5e-12 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.013G019900 [exp] 64 / 1e-10 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013230 [exp] 655 / 0 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 514 / 2e-179 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 334 / 5e-109 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 330 / 3e-107 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 329 / 6e-107 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 311 / 2e-102 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10030750 [exp] 303 / 5e-100 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 295 / 7e-96 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10014439 [exp] 267 / 6e-84 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10015529 [exp] 105 / 1e-24 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Potri.005G250600.1 pacid=42805243 polypeptide=Potri.005G250600.1.p locus=Potri.005G250600 ID=Potri.005G250600.1.v4.1 annot-version=v4.1 ATGGAGAAGAAGATTGCCATCATCGGTGCCGGAATCAGTGGCTTACTTGCATGCAAACACATACTGGAGAAGGGTTTTAGCCCTATTGTGTTTGAAGCAA GGAGTGGCATAGGTGGAGTCTGGTCTCAAACCATAGAGTCTACAAAGCTACAAATACCTAAAAAAATGTACCAGTTTTCAGATTTTGCTTGGCCACCTTC AGTTACAGAGACTTTCCCTGATGACGAACAAGTACTGGAGTACATTAAAGCCTATGCTGTTCACTTTAACATCCTTCCTAGGATCAGATTTAACTGCAAA GTGACTTGCATAGACTATGTAGTACCAGGTAATGAGGATTTCCCATCTTGGGATTTGTGGGGTGGCACTGGTTGGCCTTTTTCTCCTACTGGAAGATGGA ATGTCACTGTACAGGATGCCAGGGATCCCACTGCACCAGTTGAGGTTTACCAACTGGATTTTGTGATCCTTTGCATTGGAAAGTACAGTGACCTGCCTAA CATACCAGATTTTCCCTTGAACAGTGGGCCTGAAGTGTTTAACGGGAAGGTCTTACACTCTATGGATTATGCTGCAATGGCTAATGATTGTGCTGCTGAG TTGGTTACAAACAAACGGGTTACTATTATCGGCTTTCAGAAATCAGCAGTGGACATAGCAACAGAAGTTGCAGACAGAAATGGTGTAGATCACCCATGCA CACTGATATTCAGAACTGTCCATTGGATAGTTCCTGACTACTTTATCGCACTCACCTTCAAAAGCTTAAATCGCTTCACGGAGTTTATGGTTCACAAGCC TGATCAAGGATTTTTCATTTGGCTCTTAGTCATTTTGCTTTCACCTCTGCTGTGGATATTTTCAAAATTAGTGGAGGCCTATCTCAAGAGGAAGCAACCA TTGAAGAAATACAATATGGTCCCAGAACATGGCTTCCTCAAACAGATATCTTCATGCATGTTCACAGTGTTGCCGGCCAATTTTTATGACAAGGTCGAAG AAGGAAGCCTCGTCCTGAAGAAGTCGCAGAGTTTTAACTTTTGCAAAAATGGTTTGGTTATAGATAGCGAGGAGACCCCTATAGCAACAGATATTGTTAT CTTTGCAACCGGATACAAAAGTGATGAAAAGCTCAAGAACATTTTCAAATCAAGCTACTTTCAGAAATGCATCACTGAGTCACTAGCTCCCTTCTACAGG GAATGCATACATCCCCAGATCCCACAACTGGCAATACTTGGATACGCGGATAGTCCTGCATTCTTGTATACAACAGAAATGAAAAGCAAGTGGCTAGCCC ATTTTCTTGCTGGAAAATTTAAGTTACCAACCATAGGAGAGATGGAAGCTGATATGAAAAAATGGGAAAAATGCATGAAGTATTATGCGAATGAGAGCTA CAAAAGATCATGCATTAGCGTGTTGCTGCAAATCTATTGCAATGATCAGATCTGTAAGGACATGGGGTTTAATCCAAGAAGGAAAAAGTGGCTTCTAGCT GAGCTATTTGCTCCTTATTGTCCTGATGATTACAAATACCTATGTTGGCAGATGTAG
AA sequence Show only first row Show all	>Potri.005G250600.1 pacid=42805243 polypeptide=Potri.005G250600.1.p locus=Potri.005G250600 ID=Potri.005G250600.1.v4.1 annot-version=v4.1 MEKKIAIIGAGISGLLACKHILEKGFSPIVFEARSGIGGVWSQTIESTKLQIPKKMYQFSDFAWPPSVTETFPDDEQVLEYIKAYAVHFNILPRIRFNCK VTCIDYVVPGNEDFPSWDLWGGTGWPFSPTGRWNVTVQDARDPTAPVEVYQLDFVILCIGKYSDLPNIPDFPLNSGPEVFNGKVLHSMDYAAMANDCAAE LVTNKRVTIIGFQKSAVDIATEVADRNGVDHPCTLIFRTVHWIVPDYFIALTFKSLNRFTEFMVHKPDQGFFIWLLVILLSPLLWIFSKLVEAYLKRKQP LKKYNMVPEHGFLKQISSCMFTVLPANFYDKVEEGSLVLKKSQSFNFCKNGLVIDSEETPIATDIVIFATGYKSDEKLKNIFKSSYFQKCITESLAPFYR ECIHPQIPQLAILGYADSPAFLYTTEMKSKWLAHFLAGKFKLPTIGEMEADMKKWEKCMKYYANESYKRSCISVLLQIYCNDQICKDMGFNPRRKKWLLA ELFAPYCPDDYKYLCWQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.005G250600 [exp]	0	1
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	2.00	0.6879
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	23.23	0.6044
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	25.09	0.5916
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.017G097200 [exp]	28.84	0.5148
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241700 [exp]	51.84	0.5264
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.006G188100 [exp]	59.14	0.5539
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	64.24	0.5485
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	76.73	0.5370	MMK3.1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.010G208500 [exp]	77.35	0.5537
AT3G55580			Regulator of chromosome conden...		Potri.010G199100 [exp]	85.07	0.5236

Compare expression of checked genes

Potri.005G250600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.