Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20560 790 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 705 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 575 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G76290 551 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 538 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 529 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 524 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 521 / 1e-180 AAE12 acyl activating enzyme 12 (.1) AT1G65880 516 / 1e-178 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G21530 508 / 4e-176 AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010600 [exp] 991 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 767 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G102901 [exp] 604 / 0 AT1G20560 608 / 0.0 acyl activating enzyme 1 (.1.2) Potri.007G059401 [exp] 595 / 0 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.016G034800 [exp] 570 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 569 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 567 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036200 [exp] 564 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 563 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016011 [exp] 837 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 732 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012266 [exp] 697 / 0 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10016870 [exp] 573 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10007369 [exp] 571 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10037735 [exp] 571 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 569 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 568 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10020787 [exp] 559 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 548 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G250700.1 pacid=42803368 polypeptide=Potri.005G250700.1.p locus=Potri.005G250700 ID=Potri.005G250700.1.v4.1 annot-version=v4.1 ATGGAGGGCATGGTCAAGTGCTCAGCTAACTACGTCCCTTTGACTCCAATCAGCTTTCTTGAACGCTCAGCCATTGTTTACAGAGACAGAGTTTCTGTTG CCTATGGTGACATCAAGTACACGTGGAAGGAGATTCATGAGAGGTGCGTCAGACTCGCTTCTGCTCTTGCCCATCTCGGAATTTCCCCTGGTGATGTGGT TGCTGCATTGGCCCCAAATATTCCAGCAATGTATGAGCTACATTTCGGTGTTCCGATGGCTGGGGCAGTTTTGTGTACACTTAATGTGCGCCATGATTCT TCAATGGTGTCTGTCTTGTTGAAACACTCAGAGGCTAAACTTATTTTTGTAGACTACCAATGTCTCCCAATTGCTCAAGGAGCACTCGAGATTCTCTCAG AGAGAAAAACCAAGCTGCCACTTCTTGTCTTAATCCCAGAGTGTGGTCAGCCGGCTGCCATTTCCTCCCCTAGAATTTTGGAATATGAGAGTCTTTTGGA AAAGGGAAAATTGGACTTTGAAGTTAGACGGCCACGAGATGAATGGGATCCCATTTCGCTTAATTATACTTCAGGCACTACATCAAGTCCAAAAGGTGTT ATTTATAGCCATAGAGGAGCTTATCTTAATTCTCTTGCTGCTGCTCTTCTAAATGACATGAGTGCAATGCCTGTATATCTATGGTGCGTCCCCATGTTTC ATTGCAATGGTTGGTGTCTTACTTGGGCTGTGGCTGCACAGGGTGGTACGAATGTTTGCCAGAGATATGTCACTGCAAGAGACATATTTGAAAATATTGC TCAGCACAAGGTTACTCACATGAGTGGTGCACCAACAGTTCTGAACATGATAATAAATGCATCAGCTAGTGAAAAAAGGCCTCTTCCAGGAAAAGTGGCG GTCATGACAGGAGGTGCACCCCCACCATCTCATGTGCTATTCAAGATGGAAGAATTAGGATTTCATGTGACTCACTCATATGGTTTGACAGAAACCTATG GTCCTGGCACAGTTTGCGCATGGAAACCTGAATGGGCTTCCCTAACTCCAGAAGCTCAAGCAAAGATCAAGTCCCGTCAAGGGGTGCAACATCTTGGGTT GGAGGAACTTGATATAAAAGATCCTGTTACCATGAAGAGTGTACCAGCAGATGCAAAAACCATGGGTGAGGTTATGTTTAGAGGCAATACTGTGATGAAT GGATATTTGAAAAATTTGGAAGCAACAAAAGATGCATTCAGTGGTGGATGGTTTAGGAGTGGAGATTTAGGGGTGAAACATCCTGATGGTTACATAGAGC TAAAGGATCGATCAAAGGACATTATAATCTCCGGGGGCGAAAACATCAGCTCAATTGAGGTGGAGTCTGCACTTTTTAGTCATCCTGCAGTTCTGGAAGC AGCTATAGTAGGAAGACCTGATGATTACTGGGGAGAAACACCTTGTGCATTTGTGAAGTTGAAGGAAGGATGCAATGCCAACGCAGAAGAACTTATCAAA TTTTGTAGAGATCACTTGCCCCACTACATGACACCTCGAACTGTTGTGTTTCAGGAATTGCCAAAGACTTCAACTGGGAAGGTGCAAAAATATGTCCTGA AGGAGAAGGCAAAGGCCATGGGAAGCATTTCAAAGGGAAACACTACTAGTAAACTGTAA
AA sequence Show only first row Show all	>Potri.005G250700.1 pacid=42803368 polypeptide=Potri.005G250700.1.p locus=Potri.005G250700 ID=Potri.005G250700.1.v4.1 annot-version=v4.1 MEGMVKCSANYVPLTPISFLERSAIVYRDRVSVAYGDIKYTWKEIHERCVRLASALAHLGISPGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNVRHDS SMVSVLLKHSEAKLIFVDYQCLPIAQGALEILSERKTKLPLLVLIPECGQPAAISSPRILEYESLLEKGKLDFEVRRPRDEWDPISLNYTSGTTSSPKGV IYSHRGAYLNSLAAALLNDMSAMPVYLWCVPMFHCNGWCLTWAVAAQGGTNVCQRYVTARDIFENIAQHKVTHMSGAPTVLNMIINASASEKRPLPGKVA VMTGGAPPPSHVLFKMEELGFHVTHSYGLTETYGPGTVCAWKPEWASLTPEAQAKIKSRQGVQHLGLEELDIKDPVTMKSVPADAKTMGEVMFRGNTVMN GYLKNLEATKDAFSGGWFRSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESALFSHPAVLEAAIVGRPDDYWGETPCAFVKLKEGCNANAEELIK FCRDHLPHYMTPRTVVFQELPKTSTGKVQKYVLKEKAKAMGSISKGNTTSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	0	1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.012G023700 [exp]	1.41	0.9505
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	2.00	0.9472
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.004G217200 [exp]	3.46	0.9414
					Potri.008G181801 [exp]	4.24	0.9272
AT5G18130			unknown protein		Potri.013G057200 [exp]	4.47	0.9376
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	5.29	0.9307
AT1G77930			Chaperone DnaJ-domain superfam...		Potri.002G090600 [exp]	6.48	0.9349
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	7.41	0.9364
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	9.94	0.9206
AT5G02420			unknown protein		Potri.009G003400 [exp]	10.67	0.9036

Compare expression of checked genes

Potri.005G250700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.