Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20575 448 / 4e-162 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G39630 70 / 6e-14 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010300 [exp] 464 / 2e-168 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G055700 [exp] 61 / 1e-10 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.010G204000 [exp] 59 / 3e-10 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030748 [exp] 451 / 5e-163 AT1G20575 450 / 9e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10013228 [exp] 448 / 3e-162 AT1G20575 450 / 1e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10023414 [exp] 66 / 3e-12 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040296 [exp] 62 / 3e-11 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10001691 [exp] 51 / 3e-07 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 48 / 4e-06 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13641 [poplar] [flax] Glyco_tranf_2_3 Glycosyltransferase like family 2
Representative CDS sequence Show only first row Show all	>Potri.005G250900.2 pacid=42803759 polypeptide=Potri.005G250900.2.p locus=Potri.005G250900 ID=Potri.005G250900.2.v4.1 annot-version=v4.1 ATGGAGAAGAACAACAGATACAGTATAATAGTCCCAACGTACAACGAGCGTCTCAACATTGCACTCATCGTTTATCTCATCTTTAAACATCTCCAGGATG TTGAGTTCGAAATTATCGTTGTGGATGATGGGAGTCCTGATGGTACTCAAGAAGTTGTAAAACAGTTACAGAAAGTATATGGCGAAGATCGCATTTTGTT AAGACCTAGAGCGAAGAAGCTTGGATTAGGCACGGCTTACATTCATGGGTTGAAGCATGCGTCTGGGAATTTTGTTGTCATCATGGATGCTGATCTATCT CACCATCCAAAGTACTTGCCAAGCTTTATCAAGAAGCAGTTGGAAACTGGTGCGAGCATAGTTACTGGAACTCGGTATGTTAAAGGGGGAGGTGTACACG GGTGGAATCTGATGCGCAAGCTAACTAGTAGGGGAGCTAATGTTCTTGCTCAAACACTTCTGTGGCCTGGTGTATCTGATTTGACAGGATCTTTCAGGCT TTATAAGAAATCAGTGCTTGAAGATATCATCAGTTCTGTGGTTAGCAAGGGATATGTCTTTCAAATGGAGATGATTGTTCGGGCGTCCAGAAAAGGCTAC CAAATTGAAGAGGTTCCAATTACCTTCGTTGATAGAGTATTTGGGAGTTCAAAGCTAGGAGGTTCTGAAATTGTTGAATATTTGAAAGGCCTTGCATATC TTCTGGTTACAACATGA
AA sequence Show only first row Show all	>Potri.005G250900.2 pacid=42803759 polypeptide=Potri.005G250900.2.p locus=Potri.005G250900 ID=Potri.005G250900.2.v4.1 annot-version=v4.1 MEKNNRYSIIVPTYNERLNIALIVYLIFKHLQDVEFEIIVVDDGSPDGTQEVVKQLQKVYGEDRILLRPRAKKLGLGTAYIHGLKHASGNFVVIMDADLS HHPKYLPSFIKKQLETGASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDIISSVVSKGYVFQMEMIVRASRKGY QIEEVPITFVDRVFGSSKLGGSEIVEYLKGLAYLLVTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Potri.005G250900 [exp]	0	1
AT1G72020			unknown protein		Potri.013G110600 [exp]	15.29	0.8324
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Potri.011G077200 [exp]	27.92	0.8186	EIF4.2
AT5G15320			unknown protein		Potri.005G236500 [exp]	35.49	0.8115
AT2G35520		DAD2	DEFENDER AGAINST CELL DEATH 2,...		Potri.001G136800 [exp]	40.49	0.8108	DAD1.2
AT5G53650			unknown protein		Potri.012G022900 [exp]	42.53	0.7935
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.010G147600 [exp]	44.83	0.8089
AT1G55160			unknown protein		Potri.006G151200 [exp]	45.37	0.7738
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028425 [exp]	45.49	0.8101
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.010G066700 [exp]	59.14	0.7969
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.008G107800 [exp]	77.30	0.7707	Pt-SAR1.3

Compare expression of checked genes

Potri.005G250900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.