Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03650 827 / 0 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 825 / 0 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT3G20440 456 / 3e-147 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT4G09020 59 / 1e-08 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 57 / 4e-08 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT2G39930 51 / 3e-06 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115100 [exp] 830 / 0 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.001G359200 [exp] 463 / 2e-149 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G070800 [exp] 51 / 3e-06 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 51 / 4e-06 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.018G132500 [exp] 49 / 2e-05 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012264 [exp] 1257 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10016012 [exp] 1246 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 828 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 827 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10000912 [exp] 441 / 3e-141 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10027725 [exp] 391 / 8e-119 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10003674 [exp] 225 / 2e-66 AT3G20440 477 / 7e-163 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003675 [exp] 159 / 4e-41 AT3G20440 766 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10017150 [exp] 52 / 2e-06 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10021586 [exp] 52 / 2e-06 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02806 [poplar] [flax] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.005G251000.2 pacid=42803447 polypeptide=Potri.005G251000.2.p locus=Potri.005G251000 ID=Potri.005G251000.2.v4.1 annot-version=v4.1 ATGTTAGGTTCTTCTTCAGGTCTATTGCCAGCACCTCCTTTGTTGCCTTCTGTGGCTGAGAATTCCAAATGGGCTATAAGGTATAAAAGATGCACTGCAA AAGAGAAGCCAGTTAGACTGCCTTCTGGGGGGTCTAAGAAATTGCTTTGTCACAGCAGATTTTGTTTTCCATTAAGAATCTCAAATAATGATAGGGTTCG CCATGGTTTCGCTATATCAGCGGTTTTGACAGATGACCCAACAATGACAACCGTTGGGGATGGCATGGAAAATATCGGTCTTGTAAGCATTGATCCTGGG TTGGAATCATTTAAAGATCACTTCAGATATAGAATGAAAAGATATGTAGATCAGAAAAAGCTCATTGAAAGATACGAAGGAGGTCTTGAGGAATTTGCAC TTGGATATCAGAAATTTGGATTTAATAGAGATGAAGGAGGCATTGTCTACCGTGAGTGGGCCCCTGCAGCTCAGGAAGCACAGATTATCGGGGACTTCAA TGGATGGGATGGCTCCAACCACAGGATGGAAAAGAATGAATTTGGTGTTTGGAGTATTAAAATACCTGATTCTGGTGGAAATCCAGCAATTCCTCACAAT TCAAGGGTCAAGTTCCGATTCATGCAAGGTAATGGAGTTTGGGTTGATAGAATACCTGCTTGGATAAAATGTGCCACTGTGGATCCTGCAAGTTTTGGAG CACCATATGATGGTGTGTACTGGGACCCACCAACTTCAGAAAGGTATGAATTTAAGTTCCCGCGGCCTCCCAAACCCAATGCCCCACGCATATATGAGGC TCATGTTGGAATGAGTAGCTCAGAACCCCGTGTTAATTCCTACAGAGAATTTGCTGATAATGTTTTGCCTCGTATACGAGCAAATAACTACAACACAGTA CAACTAATGGCAGTAATCGAGCATTCCTATTATGCATCGTTTGGTTATCATGTTACGAACTTTTTTGCTGTTAGCAGCAGATCTGGAAATCCTGAAGACC TCAAGTATTTAATTGATAAAGCCCATAGCTTGGGTCTACGTGTCCTGATGGATGTTGTCCACAGTCATGCAAGTAACAATGTCACTGATGGTCTCAATGG TTTTGACATTGGCCAAGGTGCTCAAGAGTCCTATTTTCACACTGGAGATCGAGGCTACCATAATTTATGGGACAGTAGACTCTTTAATTATGCTAATTGG GAAGTTCTTCGCTTTCTGTTATCCAACTTGAGATGGTGGCTTGAGGAGTTCAAATTTGATGGGTTTCGATTTGATGGAGTAACTTCCATGTTGTACCATC ACCATGGAATCAACATGGCATTCACGGGAGATTATAATGAGTACTTCAGTGAGGCAACGGATGTTGATGCTGTTGTTTACTTAATGCTGGCTAATTATCT GATACATAATATCTTGCCAGATGCAACAGTGATTGCTGAAGATGTTTCTGGTATGCCTGGACTTGGTTGTCCAGTCTCTGAGGGGGGAGTTGGATTTGAC TACCGCCTGGCAATGGCCATCCCTGACAAATGGATTGATTACTTGAAAAACAAGAGTGATCTAGAGTGGTCAATGAATGAAATCTCCCGGAGCTTAACTA ATAGGAGATATACTGAGAAATGTGTTGCTTATGCCGAGAGCCATGACCAGTCCATTGTAGGTGACAAGACTATTGCCTTCATCCTGATGGATAAAGAAAT GTATTCTGGCATGTCTTGTTTGACAGAGGCTCCACCTGCTGTTGATCGAGGGATTGCTCTTCATAAGATGATACATTTTATAACTATGGCACTAGGTGGC GAGGGATACCTTAATTTTATGGGAAATGAATTTGGGCATCCTGAGTGGATTGACTTCCCCAGAGAAGGCAATGGATGGAGTTACGAAATGTGTAGACGCC AATGGAATCTTGCGGACATGGAACACTTAAGATACAAGTTCATGAATGCATTTGACAGAGCTATGAATTTGCTTGATGAAAAATATTCATTCCTAGCATC TACGAAGCAGATTGTGAGCAGTACAAATGAAGAAGATAAGGTTATTGTCTTTGAGCGTGGAGATCTGGTTTTTGTGTTCAATTTTCATCCGGAGAAAACA TATGATGGGTATAAGGTTGGGTGTGACTTGCCTGGGAAGTATAGAGTTGCACTGGACAGTGATGCCTTGGAATTTGGTGGACATGGAAGAGTGGGCCATG ATGCAGACCATTTCACATCTCCTGAAGGGATACCAGGAGTACCTGAAACAAATTTCAACAATCGTCCCAACTCCTTCAAAGTACTCTCGCCAGCCCGCAC ATGTGTGGTTTACTATAGAGTCGAAGAAAGCGAAGAGAGCCATGATGATGATGATGAGATGGGCTTGAATGAGATATTAGCTGCTGATGTTATACCAGAG CAAGAGGATGTTGAAGAAGCTGCCAGTCAGGCTAAGGTCGGAAAACCGCACTTGGTGGATGGTGATGGTGATGGTGATGGTAGTGGACTTAGCAAGACAG TAAACTTTGAAGTTGAAGATTTTGGGGATGATGCATCGGATGATTAA
AA sequence Show only first row Show all	>Potri.005G251000.2 pacid=42803447 polypeptide=Potri.005G251000.2.p locus=Potri.005G251000 ID=Potri.005G251000.2.v4.1 annot-version=v4.1 MLGSSSGLLPAPPLLPSVAENSKWAIRYKRCTAKEKPVRLPSGGSKKLLCHSRFCFPLRISNNDRVRHGFAISAVLTDDPTMTTVGDGMENIGLVSIDPG LESFKDHFRYRMKRYVDQKKLIERYEGGLEEFALGYQKFGFNRDEGGIVYREWAPAAQEAQIIGDFNGWDGSNHRMEKNEFGVWSIKIPDSGGNPAIPHN SRVKFRFMQGNGVWVDRIPAWIKCATVDPASFGAPYDGVYWDPPTSERYEFKFPRPPKPNAPRIYEAHVGMSSSEPRVNSYREFADNVLPRIRANNYNTV QLMAVIEHSYYASFGYHVTNFFAVSSRSGNPEDLKYLIDKAHSLGLRVLMDVVHSHASNNVTDGLNGFDIGQGAQESYFHTGDRGYHNLWDSRLFNYANW EVLRFLLSNLRWWLEEFKFDGFRFDGVTSMLYHHHGINMAFTGDYNEYFSEATDVDAVVYLMLANYLIHNILPDATVIAEDVSGMPGLGCPVSEGGVGFD YRLAMAIPDKWIDYLKNKSDLEWSMNEISRSLTNRRYTEKCVAYAESHDQSIVGDKTIAFILMDKEMYSGMSCLTEAPPAVDRGIALHKMIHFITMALGG EGYLNFMGNEFGHPEWIDFPREGNGWSYEMCRRQWNLADMEHLRYKFMNAFDRAMNLLDEKYSFLASTKQIVSSTNEEDKVIVFERGDLVFVFNFHPEKT YDGYKVGCDLPGKYRVALDSDALEFGGHGRVGHDADHFTSPEGIPGVPETNFNNRPNSFKVLSPARTCVVYYRVEESEESHDDDDEMGLNEILAADVIPE QEDVEEAASQAKVGKPHLVDGDGDGDGSGLSKTVNFEVEDFGDDASDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.005G251000 [exp]	0	1
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Potri.005G166700 [exp]	3.87	0.7410
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	4.12	0.8213
AT5G50360			unknown protein		Potri.015G091900 [exp]	6.48	0.7809
AT3G55760			unknown protein		Potri.008G159500 [exp]	14.28	0.7598
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Potri.014G066300 [exp]	14.83	0.7438	PtrEXPB1,Pt-EXPB4.1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	15.62	0.7649	MYB.53
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	27.01	0.7628
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	27.42	0.7376
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	28.26	0.7372	ABF1.1
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	30.74	0.7545

Compare expression of checked genes

Potri.005G251000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.