Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30600 1140 / 0 BTB/POZ domain-containing protein (.1.2.3.4.5) AT2G46260 46 / 0.0001 BTB/POZ/Kelch-associated protein (.1) AT3G61600 44 / 0.0005 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT4G01160 44 / 0.0006 BTB/POZ/Kelch-associated protein (.1) AT4G08455 42 / 0.0007 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010100 [exp] 1440 / 0 AT2G30600 1110 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Potri.005G178400 [exp] 46 / 8e-05 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G077000 [exp] 45 / 8e-05 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.002G082800 [exp] 45 / 0.0002 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016014 [exp] 1236 / 0 AT2G30600 1131 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10012262 [exp] 1222 / 0 AT2G30600 1117 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10042763 [exp] 46 / 5e-05 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 46 / 5e-05 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10018289 [exp] 46 / 0.0001 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 46 / 0.0001 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10042717 [exp] 44 / 0.0004 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 44 / 0.0004 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0202 [poplar] [flax] GBD PF00754 [poplar] [flax] F5_F8_type_C F5/8 type C domain CL0033 [poplar] [flax] POZ PF07707 [poplar] [flax] BACK BTB And C-terminal Kelch
Representative CDS sequence Show only first row Show all	>Potri.005G251300.1 pacid=42805606 polypeptide=Potri.005G251300.1.p locus=Potri.005G251300 ID=Potri.005G251300.1.v4.1 annot-version=v4.1 ATGATAGAAGAGAAAGAGAAGAAGTTTCTCACAGTAGCACCATTTCAGTGTGCTTGGAGGAAAGATTTGAAATTTAGGGAAGCTGGAAGAGGTTGTGTGG CTTTTGATGCTTTTGCTCACAATGATGTCACAGTGGTGTTTAGGGAGAATGTAGGGAGTCAACACTACCATTATAAGAGGGATAATAGTCCTCATTATAC TGTGATTCTTGGGAGTCATAGGAATCGTCGACTGAAAATTGAGGTTGATGGCAAAACAGTTGTTGATGAGGAAGGTGTTGCGCTTTGCTGCTCATCCATG TTTCAAAGTTATTGGATCAGTATTTATGATGGGTTGATTAGTGTCGGAAAAGGGAGATACCCTTTTCAGAATCTTGTGTTTCAGTGGTTAGATTCAAATC CAAATTGTAGCGTTCGGTATGTTGGTCTTAGCAGTTGGGATAAACATGTCGGGTATAGAAATGTCAATGTGTTGCCATTGCCAAAGAATCATATGTTGCT ATGGAAGCAAGTTGACTCTGGAGAATATGAGGGGACAGATGATGGAGAAGAGGAGTTAGAAGGTGGACAGATGAGCTATGAGAGACGGGGACTTGAGAAT TTTCTTGAGAGTTGGGAATTATCTGATGTATTGTTCATTGTTGGCAAGGAGGAAAGACTTGTCCCAGCTCATAAGGTTATCTTACAAGCATCTGGTAATT TTCCTTTGAGCTCGTCAAATGAAGATGTTATTCAGCTACAGGATGCAACATATCCAATTCTTCATGCACTTCTTCAATATATATACACCGGCCACACACA GATTTCAGAGTCGCAACTTGGTTCTCTATGGGCATTGAGCTTACAATTTGAAGTGATGCCACTGGGGAAGTTCTGTGAGGAAATTGTGGAGCGATTTAAA TTGAATAAAAAGTTGTTTGACTCTGGTAAGAATGTGGAATTGTCATATCCAAGCTCCCAGCCCCATTGTTGTATGGCCTTCCCTTCTCAACTGCCTATAA ATGTGCAAAGGCTTAAACAGTTGCAGTCGACTGGAGACTATAGTGACATAAACATTTACATTGAGGGTCATGGTCTTGTTGCTCAACCTCACAAAGTCAT TCTAAGTTTATGGAGTGTTCCATTTTCAAAGATGTTTACAAATGGAATGAGTGAGAGTAGATCCTCAGAGGTTTTCTTAAGGGATGTGTCACCTGAAGCC TTCAAGGTTATGCTTGAATTCATGTATAGTGGAGAACTCGGTTTGGAAGATTCCGTGGAATTCGGAACCTTGCTCCTCCAGGCTCTTTTGTTAGCTGATC AATTTGGGGTCACTCTCCTTTACCAAGAATGCTGCAAAACACTTTTAGAGTGCCTATCGGAGGACTCAGTAGGTCCAATCCTTCAAGCGGTGTCATTGAT TCCATCATGTAAACTCATTGAAGAAACATGCGAGAGGAAATTTGCTATGCACTTTGATTATTGTACCACTACAAGCCTTGATTTCATCTTATTAGATGAG ACAAATTTTAGCAATATCATTCAGCATCAAGATCTAACTGTAACATCTGAAGAAAGAGTTCTCAATGCAATCTTCATGTGGTGTATGAGAGATAAAGAAT TGTGTGGATGGGAGGTCGTCGCTGAGCTACTTGCACTTTCTACTCCTGACCTCCTTTTCAGGGACAGGCTTCAATCTCTTAATAACTTGTTGCCATTTGT GCGATTTCCATTGATGCCATATGACTTGCTTAAGAAGCTGGGGCAAAGCAACATACGCAGGCATGTCCCTATTTTTGATGATCTTGTGAGGGAGGGCATC TGTTATGCAGAATTTGGATCCCTAAGGCCAGGGAATGACCAAAACCCTAGGTTTCAACATAGGCGATCTAGCTTTAAGGAGCTCCAATACATATGTGATG GTGACAGCAATGGAGTACTCTACTTTGCTGGTACATCTTATGGAGAACATCAGTGGATTAATCCCGTTTTAGCAAAGAGAATCACGATCACTGCCAGCAG TCCCCCTTCAAGATATACCGACCCCAAGACTTTGGTGTCACGAACTTATCAGGGAACGTCTTTTGCTGGGCCTTGCATGGAAGATGGACACATACGTGCA TGGTGGATGGTTGACATTGGCCAAGATCATCAGCTTATGTGCAACCACTACACTTTGAGACAAGATGGGTCAAGAGCCTTCATAAGATTTTGGAATTTGC AGGGTTCACTGGATGGGAAGACATGGACGAACTTGAGAGTGCACGAGAACGACCAAACAATGTGCAAGGCTGATCAGTTTGCATCATGGCCCATAACCGG GCCACATGCTCTACTTCCTTTTAGGTTCTTCAGGGTTGTTCTAACAGGTCCGACGACAGATGCCTCAAACCCCCACAATTTGTGCATCTGCTTCTTGGAA CTCTATGGTTACTTCCACTAG
AA sequence Show only first row Show all	>Potri.005G251300.1 pacid=42805606 polypeptide=Potri.005G251300.1.p locus=Potri.005G251300 ID=Potri.005G251300.1.v4.1 annot-version=v4.1 MIEEKEKKFLTVAPFQCAWRKDLKFREAGRGCVAFDAFAHNDVTVVFRENVGSQHYHYKRDNSPHYTVILGSHRNRRLKIEVDGKTVVDEEGVALCCSSM FQSYWISIYDGLISVGKGRYPFQNLVFQWLDSNPNCSVRYVGLSSWDKHVGYRNVNVLPLPKNHMLLWKQVDSGEYEGTDDGEEELEGGQMSYERRGLEN FLESWELSDVLFIVGKEERLVPAHKVILQASGNFPLSSSNEDVIQLQDATYPILHALLQYIYTGHTQISESQLGSLWALSLQFEVMPLGKFCEEIVERFK LNKKLFDSGKNVELSYPSSQPHCCMAFPSQLPINVQRLKQLQSTGDYSDINIYIEGHGLVAQPHKVILSLWSVPFSKMFTNGMSESRSSEVFLRDVSPEA FKVMLEFMYSGELGLEDSVEFGTLLLQALLLADQFGVTLLYQECCKTLLECLSEDSVGPILQAVSLIPSCKLIEETCERKFAMHFDYCTTTSLDFILLDE TNFSNIIQHQDLTVTSEERVLNAIFMWCMRDKELCGWEVVAELLALSTPDLLFRDRLQSLNNLLPFVRFPLMPYDLLKKLGQSNIRRHVPIFDDLVREGI CYAEFGSLRPGNDQNPRFQHRRSSFKELQYICDGDSNGVLYFAGTSYGEHQWINPVLAKRITITASSPPSRYTDPKTLVSRTYQGTSFAGPCMEDGHIRA WWMVDIGQDHQLMCNHYTLRQDGSRAFIRFWNLQGSLDGKTWTNLRVHENDQTMCKADQFASWPITGPHALLPFRFFRVVLTGPTTDASNPHNLCICFLE LYGYFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30600			BTB/POZ domain-containing prot...		Potri.005G251300 [exp]	0	1
					Potri.016G031166 [exp]	3.31	0.9303
					Potri.016G031232 [exp]	6.70	0.9217
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.001G245200 [exp]	7.74	0.8794
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.006G236300 [exp]	9.38	0.8828
					Potri.005G201350 [exp]	11.31	0.8354
AT2G04240		XERICO	RING/U-box superfamily protein...		Potri.014G170400 [exp]	11.53	0.8527
AT5G28010			Polyketide cyclase/dehydrase a...		Potri.004G051500 [exp]	12.96	0.8189
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	13.56	0.9039
AT1G29350			Kinase-related protein of unkn...		Potri.002G059300 [exp]	15.49	0.8914
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	15.81	0.8930

Compare expression of checked genes

Potri.005G251300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.