Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYCB2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76310 538 / 0 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 530 / 0 CYCB2;3 Cyclin B2;3 (.1) AT4G35620 385 / 2e-131 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 382 / 3e-130 CYCB2;1 Cyclin B2;1 (.1) AT1G20590 266 / 5e-88 Cyclin family protein (.1) AT5G06150 271 / 1e-86 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 270 / 1e-86 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT1G16330 259 / 9e-80 CYCB3;1 cyclin b3;1 (.1) AT2G26760 248 / 2e-78 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT4G37490 246 / 5e-77 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010000 [exp] 728 / 0 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 498 / 4e-176 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 474 / 2e-166 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.001G272000 [exp] 273 / 6e-88 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.016G033000 [exp] 267 / 6e-85 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.009G066600 [exp] 261 / 5e-83 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.006G035200 [exp] 259 / 7e-82 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.010G173200 [exp] 241 / 7e-73 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 229 / 3e-68 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016015 [exp] 542 / 0 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 474 / 2e-166 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 467 / 1e-163 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10012261 [exp] 458 / 6e-159 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10036080 [exp] 269 / 4e-86 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 262 / 3e-83 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10039033 [exp] 232 / 2e-71 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10003800 [exp] 226 / 6e-69 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10001765 [exp] 233 / 2e-68 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10010483 [exp] 202 / 1e-60 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G251400.2 pacid=42805471 polypeptide=Potri.005G251400.2.p locus=Potri.005G251400 ID=Potri.005G251400.2.v4.1 annot-version=v4.1 ATGGCTGGATCCGATGAGAACAACCCGGGGGTGATCGGACCCGGAAATATTCAAGAGGGTTTACGTGGCCGAGTAGGGAAGTTTCCAGTGGCGACCGGAA CTAATCGCCGGGCGTTGAGTAACATTAATCGGAACATCATCGGAGGTCCACCGTACCCCTGTGCTGTCAACAAAAGAGGGTTATCAGAAAGAGAAGCTTT TTGTAATAAGAACCCACCAATTCCAGTGCATCGACCTTTGACTAGGAAGTATGCGGCCCAGCTTGCTAACAAGCAGCAGCAACAACTTGAACCAGAGGAA ATCAAAAAACCAGTTCGCCCAGTCCCAATTTCTAGTGAGCCAGAAGATTGTAACATCATAGATGTGGAGGGCTACAAGACTAGTGATGACTTTTCTGCTC CGACGTTTGTGCAACATACGGAGGCAATGCTGGAGGAGATCGACAGGATGGATGAAGTTGAAATGGAAGATGTTGAAGAAGAGCCGGTCTTGGACATAGA CGGCTGTGACAAGAGGGATCCACTTGCTGTAGTGGAATACATTGATGATTTATACAATTTCTACAAGAAAGCAGAGAGATCTGGCTGTGTCCCACCAAAC TACATGGCACAGCAATTTGACATTAATGACAGAATGAGAGGCATTCTCATTGATTGGTTGATTGAGGTGCACTACAAGTTTGAATTGATGGAGGAGACCT TATACCTCACTGTCAATCTCATTGATAGATTTCTAGCAGTTCATCCAGTCGTGAGAAAGAAACTCCAGCTCGTTGGAGTGACAGCCATGCTGCTTGCATG CAAATATGAAGAAGTATCAGTTCCAGTTGTGGAGGATCTCATTCTGATTTCTGACAAAGCATACAGCAGAAATGAAGTGCTTGACATGGAGAAGAACATG GTCAACGCTTTACAGTTTAATCTCTCTGTTCCCACTCCTTATGTTTTTATGAGGAGATTCCTAAAAGCTTCACAATGTGACAGGAAGCTTGAATTGCTTG CGTTCTTCATAATTGAGCTTTGCCTCGTCGAATACAACATGCTCAAGTTTCCACCTTCATTGTTAGCTGCTGCTGCAATATACACCGCTCAATGCACCCT TAGTGGAACAAAGCAATGGAGCAAGACAAATGAGTGGTGCACTGGCTACTCAGAACAGCAGCTTACGGAATGCTCAAGGCTTATGGTTAATTTTCATAGG ATTGCTGGTACAGGGAAGCTAACAGGTGTACACCGGAAGTATTGTACCTCAAAATTTGGTTACGCAGCAAAGAACGAACCCGCGGACTTCTTACTGGATC CTCCATTCTAG
AA sequence Show only first row Show all	>Potri.005G251400.2 pacid=42805471 polypeptide=Potri.005G251400.2.p locus=Potri.005G251400 ID=Potri.005G251400.2.v4.1 annot-version=v4.1 MAGSDENNPGVIGPGNIQEGLRGRVGKFPVATGTNRRALSNINRNIIGGPPYPCAVNKRGLSEREAFCNKNPPIPVHRPLTRKYAAQLANKQQQQLEPEE IKKPVRPVPISSEPEDCNIIDVEGYKTSDDFSAPTFVQHTEAMLEEIDRMDEVEMEDVEEEPVLDIDGCDKRDPLAVVEYIDDLYNFYKKAERSGCVPPN YMAQQFDINDRMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVHPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRNEVLDMEKNM VNALQFNLSVPTPYVFMRRFLKASQCDRKLELLAFFIIELCLVEYNMLKFPPSLLAAAAIYTAQCTLSGTKQWSKTNEWCTGYSEQQLTECSRLMVNFHR IAGTGKLTGVHRKYCTSKFGYAAKNEPADFLLDPPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	0	1	Pt-CYCB2.2
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Potri.006G136600 [exp]	1.41	0.8744	Pt-TES.1
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	3.87	0.8620
AT3G57880			Calcium-dependent lipid-bindin...		Potri.004G043000 [exp]	5.29	0.8235
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	7.41	0.8389
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	8.36	0.8572
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	9.79	0.8489
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.006G128600 [exp]	12.68	0.8830
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	12.72	0.8179	APGM.2
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G099600 [exp]	12.84	0.8068
AT5G41460			Protein of unknown function (D...		Potri.003G131400 [exp]	13.74	0.8131

Compare expression of checked genes

Potri.005G251400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.