Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12680 662 / 0 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G12580 246 / 1e-75 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT1G76040 241 / 2e-73 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G50700 233 / 1e-70 CPK33 calcium-dependent protein kinase 33 (.1) AT2G38910 234 / 2e-70 CPK20 calcium-dependent protein kinase 20 (.1) AT3G20410 233 / 3e-70 CPK9 calmodulin-domain protein kinase 9 (.1) AT2G35890 231 / 6e-70 CPK25 calcium-dependent protein kinase 25 (.1) AT3G10660 233 / 1e-69 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 231 / 4e-69 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT5G19360 229 / 6e-69 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112400 [exp] 543 / 0 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.017G048400 [exp] 538 / 0 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.012G134600 [exp] 239 / 4e-73 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.013G112500 [exp] 236 / 1e-71 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.010G244800 [exp] 236 / 2e-71 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G015500 [exp] 235 / 3e-71 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.016G065700 [exp] 236 / 5e-71 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.003G120800 [exp] 233 / 1e-70 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.006G200600 [exp] 234 / 5e-70 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036464 [exp] 622 / 0 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10041132 [exp] 614 / 0 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10038889 [exp] 240 / 2e-73 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10015009 [exp] 239 / 4e-73 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10029346 [exp] 234 / 2e-70 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10008958 [exp] 232 / 2e-70 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 234 / 4e-70 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10006777 [exp] 231 / 8e-70 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10016200 [exp] 232 / 2e-69 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10021248 [exp] 231 / 2e-68 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.005G251500.1 pacid=42804668 polypeptide=Potri.005G251500.1.p locus=Potri.005G251500 ID=Potri.005G251500.1.v4.1 annot-version=v4.1 ATGAGGAAGAAGAGGAAAGGGAGTGAAGCAGATACGGGTGAGAATGCACAAGAGGAAGTAATACCAACGTGTGATTTGAAATCATCCAATGTTAGGTCTC ATTATTCGTTAGAAGATTATAATAGGTTAAAGAAGAGGTGCAAAGAAGATCTGGGTAGGGAACCTGTTACTTCTTTCAAAAGTAGGCTTGCAGGCATTGC TACTGCCCCGCCTTGTGGTGCCTCATCTTCGTTGGTACTACCTGGAAGAGGGCTTAAGAGGAAGATAGGGTGCATAGATGTTTCTACTCAAACGGGTAGG AAAAATAAGTTTGAGGATGATTATATTTTGGGGGATGCTATTGGGCGTGGTAAATTTGGCTCCGTTTGGTTGTGCAGGTCTAAGGTTACTGGTGTTGAGT TTGCTTGTAAGACTTTGCAGAAGGGAGAGGAGACAGTTCATAGGGAGGTAGAGATAATGCAGCATCTGTCTGGTCATCCTGGTGTGGTGACATTGCATGC TGTGTATGAGGAGTCGGAGTGTTTTCAGCTTGTGATGGAGTTGTGCTCTGGAGGACGTTTGATTGATCAGATGGTTGATGAGGGACGGTACTCAGAGCAA CGCGCTGCTAATATATTCAAGGATGTGATGTTAGTTATTAAGTATTGTCATGACATGGGTGTTGTGCACCGAGATATAAAGCCTGAGAATATACTTCTAG TGAGCCTGGGGAAGATGAAGCTTGCAGATTTTGGCCTGGCTATGAGAATTTCAAATGGGCAGACCTTATCGGGTTTGGCTGGAAGTCCAGCATATGTTGC CCCTGAAGTTCTGTCAGGAAATTATTCCGAGAAGGTTGACATTTGGAGTGCTGGTGTCCTCCTGCATGCTCTGTTGGTCGGGGGCCTTCCATTTCAAGGC GACTCCTTAGAGGCTGTTTTTGAGGCAATCAAGAATGTCAAGCTTGATTTTCACACTGGAATATGGGACTCTATATCTAAACCTGCACGTGATCTAGTTG CAAGAATGTTGACAAGGGATGTCTCAGCCAGGATCACCGCAGATGAAGTACTGAGGCATCCATGGATTTTGTTTTACACAGAGCGTACCTTAAAGACATT GTCCATCAGATCAAAAACAAAGAATCAAGGTGCTGCAACTTCCTGCCAACCTGCAAATGCACTTGTGTCACCTGGAAACCAGGTAGGAGCTGGCTCTTCT GAAGAGGACTTGAGTCAGCATCCATCTGATAGTTTGAGCTGCAAGTCAGAAGAGCAGGATGAATGTGGTTTAGTTGACGCGCTTGCAGTGGCGATTTCCC ATGTTAAGATATCAGAGCCAAAGAGGAGTAGATTGTGTGGACCCACTGGCCCAATAGAGCAGCAGTGTTCATCTAACATCACCGCTAACAATCTGTGTAG AGCATTTTGA
AA sequence Show only first row Show all	>Potri.005G251500.1 pacid=42804668 polypeptide=Potri.005G251500.1.p locus=Potri.005G251500 ID=Potri.005G251500.1.v4.1 annot-version=v4.1 MRKKRKGSEADTGENAQEEVIPTCDLKSSNVRSHYSLEDYNRLKKRCKEDLGREPVTSFKSRLAGIATAPPCGASSSLVLPGRGLKRKIGCIDVSTQTGR KNKFEDDYILGDAIGRGKFGSVWLCRSKVTGVEFACKTLQKGEETVHREVEIMQHLSGHPGVVTLHAVYEESECFQLVMELCSGGRLIDQMVDEGRYSEQ RAANIFKDVMLVIKYCHDMGVVHRDIKPENILLVSLGKMKLADFGLAMRISNGQTLSGLAGSPAYVAPEVLSGNYSEKVDIWSAGVLLHALLVGGLPFQG DSLEAVFEAIKNVKLDFHTGIWDSISKPARDLVARMLTRDVSARITADEVLRHPWILFYTERTLKTLSIRSKTKNQGAATSCQPANALVSPGNQVGAGSS EEDLSQHPSDSLSCKSEEQDECGLVDALAVAISHVKISEPKRSRLCGPTGPIEQQCSSNITANNLCRAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.005G251500 [exp]	0	1
AT5G18130			unknown protein		Potri.013G057200 [exp]	9.89	0.8328
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	15.42	0.8278
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.017G036700 [exp]	16.73	0.8179	Pt-RFS.3
AT5G45290			RING/U-box superfamily protein...		Potri.018G114700 [exp]	17.74	0.7671
AT4G17790			SNARE associated Golgi protein...		Potri.001G140200 [exp]	18.97	0.8017
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.010G163000 [exp]	24.33	0.8127	Pt-WRKY3.2
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	26.26	0.8110
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	26.83	0.8168
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	27.82	0.8218
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G041600 [exp]	31.08	0.7842

Compare expression of checked genes

Potri.005G251500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.