Plant FIBer expression Database

CAT3,Pt-CAT1.5 (Potri.005G251600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CAT3,Pt-CAT1.5
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35090 945 / 0 CAT2 catalase 2 (.1.2)
AT1G20630 926 / 0 CAT1 catalase 1 (.1)
AT1G20620 843 / 0 SEN2, CAT3, ATCAT3 SENESCENCE 2, catalase 3 (.1.2.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G009800
[exp]
982 / 0 AT4G35090 960 / 0.0 catalase 2 (.1.2)
Potri.005G100400
[exp]
952 / 0 AT4G35090 958 / 0.0 catalase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030745
[exp]
972 / 0 AT4G35090 947 / 0.0 catalase 2 (.1.2)
Lus10013225
[exp]
967 / 0 AT4G35090 942 / 0.0 catalase 2 (.1.2)
Lus10012258
[exp]
966 / 0 AT4G35090 945 / 0.0 catalase 2 (.1.2)
Lus10016017
[exp]
837 / 0 AT4G35090 822 / 0.0 catalase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00199 Catalase Catalase
PF06628 Catalase-rel Catalase-related immune-responsive
Representative CDS sequence
>Potri.005G251600.2 pacid=42802758 polypeptide=Potri.005G251600.2.p locus=Potri.005G251600 ID=Potri.005G251600.2.v4.1 annot-version=v4.1
ATGGATCCTTACAAGCACCGTCCATCAAGCGCTTTCAATTCTCCATACTGGACTACAAATTCTGGTGCTTCGGTCTGGAACAACAACTCTTCTTTGACCG
TTGGATCTAGAGGTCCAATCCTGCTTGAGGATTACCATCTGGTGGAGAAGATTGCCAATTTTGACAGGGAGAGGATTCCAGAGCGTGTTGTCCATGCTAG
GGGAGCCAGTGCAAAGGGTTTCTTTGAGGTTACCCACGATATCTCTAACCTCTCATGTGCTGATTTTCTTCGGGCCCCAGGAGTTCAGACGCCTGTAATT
GTCCGCTTCTCCACAGTTATCCATGAACGTGGCAGCCCTGAAACCCTGAGGGATCCTCGTGGTTTTGCAGTGAAGTTTTACACCAGAGAGGGCAACTTTG
ATCTTGTGGGAAACAATTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAATTCCCAGACATGGTACATGCCCTTAAGCCCAACCCCAAGTCTCACATTCA
GGAGAACTGGAGGATTCTCGACTTCTTCTCCCACCATCCTGAAAGTTTGCACATGTTCTCCTTTCTCTTTGATGATTTGGGTGTTCCACAAGATTATAGA
CACATGGAAGGCGCTGGTGTCAACACCTACACGCTGATCAACAAGGCTGGAAAGGCAAACTATGTGAAATTTCATTGGAAACCTACTTGTGGTGTGAAAT
GTTTGTTAGAGGACGAGGCAATTAAAGTTGGAGGTGCAAATCACAGTCATGCCACTCAAGATCTATACGACTCAATTGCAGCTGGCAACTATCCTGAGTG
GAAACTTTTCATCCAGACAATCGATCCCGACCATGAAGACAGGTTTGATTTTGACCCACTTGATGTAACAAAGATCTGGCCCGAGGATATCCTGCCCCTG
CAGCCAGTTGGTCGCTTGGTCTTGAATAAGAACATCGATAACTTCTTTGCTGAAAATGAGCAGCTTGCTTTCTGCCCTGCTATTGTGGTTCCTGGTATTT
ACTATTCAGATGACAAGCTTCTCCAGACTCGAATCTTCTCCTATGCTGATACCCAGAGGCACCGTCTTGGACCAAACTATCTGCAACTCCCAGTTAATGC
TCCCAAGTGTGCTCATCACAACAATCATCATGAAGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCAACTATTTCCCATCAAGGCATGATCCATCT
CGTCACGCTGAGAGATTCCCCATTCCTTCTGCTGTCTGCAGTGGAAGGCGTGAGAAGTGCATCATTGAGAAGGAGAACAACTTCAAGCAACCTGGAGAGA
GATACAGATCCTGGGCACCAGACAGGCAAGAACGTTTCGTTCGCAGATGGGTTGATGCCTTGTCCGAACCGCGTGTCACACATGAGGTTCGCAGCATCTG
GATCTCATACTGGTCTCAGGCTGATAAATCTTTGGGCCAGAAGCTAGCATCTCATCTCAATGTGAGACCAAGCGTCTGA
AA sequence
>Potri.005G251600.2 pacid=42802758 polypeptide=Potri.005G251600.2.p locus=Potri.005G251600 ID=Potri.005G251600.2.v4.1 annot-version=v4.1
MDPYKHRPSSAFNSPYWTTNSGASVWNNNSSLTVGSRGPILLEDYHLVEKIANFDRERIPERVVHARGASAKGFFEVTHDISNLSCADFLRAPGVQTPVI
VRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGVPQDYR
HMEGAGVNTYTLINKAGKANYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKIWPEDILPL
QPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGIYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRHDPS
RHAERFPIPSAVCSGRREKCIIEKENNFKQPGERYRSWAPDRQERFVRRWVDALSEPRVTHEVRSIWISYWSQADKSLGQKLASHLNVRPSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35090 CAT2 catalase 2 (.1.2) Potri.005G251600
[exp]
0 1 CAT3,Pt-CAT1.5
AT5G57655 xylose isomerase family protei... Potri.018G096049
[exp]
1.73 0.8228
AT4G15210 BAM5, AT-BETA-A... REDUCED BETA AMYLASE 1, ARABID... Potri.017G040800
[exp]
14.21 0.8043 Pt-BMY1.1
AT5G13980 Glycosyl hydrolase family 38 p... Potri.014G143600
[exp]
16.85 0.7749
AT1G54070 Dormancy/auxin associated fami... Potri.003G070500
[exp]
17.23 0.6819
AT3G07350 Protein of unknown function (D... Potri.004G184700
[exp]
17.49 0.7172
AT3G48530 KING1 SNF1-related protein kinase re... Potri.012G097000
[exp]
22.80 0.7028
AT1G11380 PLAC8 family protein (.1) Potri.011G040100
[exp]
25.19 0.7457
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
33.31 0.6743
AT5G19930 Protein of unknown function DU... Potri.018G073000
[exp]
36.98 0.6852
AT2G18700 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE... Potri.018G097700
[exp]
42.70 0.6772

Potri.005G251600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.