Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 740 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT1G76350 724 / 0 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 712 / 0 NLP4 Plant regulator RWP-RK family protein (.1.2) AT2G17150 613 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G64530 442 / 1e-141 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 413 / 2e-129 NLP7 NIN like protein 7 (.1) AT2G43500 395 / 1e-122 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 389 / 9e-121 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G38340 279 / 3e-81 NLP3 Plant regulator RWP-RK family protein (.1) AT1G18790 53 / 3e-07 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009700 [exp] 1451 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166932 [exp] 785 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 773 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 638 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 635 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 628 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 468 / 6e-150 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 464 / 2e-148 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 421 / 7e-132 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012257 [exp] 811 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 798 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 539 / 4e-179 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 536 / 2e-178 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 460 / 2e-150 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 430 / 1e-138 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 428 / 7e-135 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 410 / 1e-128 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 404 / 4e-126 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 384 / 5e-120 AT4G24020 783 / 0.0 NIN like protein 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G251700.3 pacid=42805044 polypeptide=Potri.005G251700.3.p locus=Potri.005G251700 ID=Potri.005G251700.3.v4.1 annot-version=v4.1 ATGATGGAAGATGGTGTTTTATCACCAGGTATGATGCTGGGTGCAGCGGTTGATTCAGCTATGGACTTTGACTACATGGATGAATTGTTGTTAGAAGGTT GCTGGGTGGAAACAACGGATGGATCTGAGTTTCTTAATCCTAGTCTGTCGAATTCTGCTGCCTTATTTGATCCTTCATTTATGTGGCCATCTCCAGAGAT GAACAATGGTAATCCAGCGTCTAGTCTGTCCCAAAAGGGCAGTCAAGAAGTCAGCCATATACCATTGTTGCCAGGGAATTCTCCTAGTGATATCCAATCC AGAAGTCCTGTTGGTGAGATTGCGGTTTCGGCAGCTGGATGGGAATACAATGCAACCGAAGGTTCTGAATTAGGAAAACGATGGTGGATAGGACCTGCTC CGAATCCAAGTCCTGGAACTACTGTGAAGAGGAGATTAATTAAGGCAGTGGAGTGCATTAAAGATTTAACGAAAAATAAAGATGTTCTTATACAAATATG GGTCCCTGTTAATAGAGGAGGCAGACGTGTTCTTACAACTCATGATCAACCTTTTGCTCTTGATCCCAGCAGTGAGAGATTGGCAAGTTACAGAGACATA TCAGTTAAATATCAGTTTTCTGCTGAGAAGGATTCCAAGGACTCGGTTGGCATGCCTGGTCGGGTTTTCTTGGGTAAGGTTCCTGAGTGGACTCCTGATG TTCGATTCTTTAGAAATGATGAATACCCACGAGTGAATCATGCTCAGCAGTGTGATGTACGTGGAACTCTTGCCCTTCCTGTTTTCGAACAAGGTAGCCG GACTTGCTTGGGAGTAATTGAGGTGGTGACCACTTCACAAAAGATCAAGTACCTTCCGGAGCTTGAAAGTGTATGCAAGGCTCTTGAGGCTGTTGATCTT AGGAGTTCTGAAGTTCCAAGCATACAGAATCTAAAGGCCTGTGATATGTCTTACCAAGCTGCATTACCTGAGATTCAAAAGGTTCTGAGAGCTGCCTGTG AGACACATAGATTGCCCTTAGCTCAAACTTGGGTCCCGTGTATACAACAAGGCAAGGGAGGATGCCGGCATTCAAATGAGAACTACTATCATTGTGTTTC TACCGTGGATGATGCTTGCTGTGTAGGTGATCCTGCTTTCCAGGGTTTTCTAGAGGCTTGCTCGGAGCATCACTTGCTAAAAGGTCAAGGAGTTGTTGGG GAAGCCTTTATGACTAACCAACCTTGCTTCTCAGGCGATGTAACTTTATATGGCAAGACTGAGTATCCTCTTTCTCACCATGCAAGGATTTTTGGACTGT GTGCTGCTGTTGCAATCCGCTTGCGAAGCATGTACACTGGTACAACAGATTTTGTCCTGGAGTTCTTCCTGCCCGTTGATTGCAGGGATCCTCAAGAGCA GAAGACAATGCTCACTTCACTGTCCATCATTATCCAGCGTGTTTGCCAGACTTTACGGGTAGTAACAGTCAAAGAACTAGAGGAAGAAACTGATTTGCCA GTTAGTGAAGTCCTAGTACCTTCGGATGGTAGATCTAGTGGAGAAGAGACGTCAACAGTTAAAGAGTCTTATTCAGAAAGGAATGCTAGAGATAATTCAC CCTGGACTGCCTGTCTCCTGAAGGTCCAACAAAGTGAAAGTAACGCCTCTTTATCTGAAAAAGACAAAGAAAAGGTAATGTGTGAAAAATCCTTTGAGTC CAGGCACAATCAAGAAGATTATAGCCTAAGAGGGAGTACTAAATATGGCGGAGATTCTACTTCTGCTGAAGGTAGCTTTTCAAGTGTCTGCAAGACTAAA CCAGGAGAAAAAAGGCGCGCCAAAACAGAGAAAACAATCACCTTGCAAGTTCTTCGGCAATATTTTGCTGGCAGCTTAAAGGATGCTGCGAAGAGTATTG GTGTTTGCCCCACTACATTGAAAAGAATATGCAGGCAACATGGAATTAACCGCTGGCCTTCCCGAAAAATCAAGAAGGTTAGTCACTCCTTACAGAAACT CCAATGCGTTATTGACTCGGTCGAAGGTGCCCCTGGCTCTGTTCAGATTGGTTCCTTTTATGAAAATTTCCCGGAGCTCGCCTCACCAAATTCATCAAGA AATAGCTCACTATCAACTTTAAATCCAAGCAGTCATCCGAAACCATCAGGCATTCAGCTTGAGGGAGGTACTTTCAGCTCCCACGTTGCTGAACCAAAAT CACCTTCACCCTCATGTAGTCTTAGTTCCAGTTCTAGCCATAGCTATTCCAGTACAACACAGCAATATCCTTCTGCCATCACTGTTTCTGCTAGTGAAGA CCCAAAGCTTGGAGAAAACTTAGGCAGTGGTGTTTTGAAGAAGATCAGAAGCAATGCAGAGCTCCATGCATCAATTCTAGAAGAACGGAAGCTAATGCTG CGATCCCAGAGTCATACAACTCTTACAGAACTGGGGAACCGTCCGCCCTTACCTAAAGATAGTAGCCGATTATCTCAAGAGATGGATGGTCACAGAGTGA AAGTCTCGTTTAGAAATGATAAAATCCGGCTCCGCATGCCAAACAATTGGGTATTTAAAGATTTATTGCAAGAGATCATAAGACGGTTTAATTTAGATGA CATGCATAGATATGATCTGAAGTACTTGGATGATGATTCTGAGTGGGTCTTGTTAGCATGTGATGATGATTTGGAGGAGTGTATTGATGTATGCGGTTCA GGTGATAACCAAACAATTAAACTCTTGATTGAAGTTTCTCCTCATCCTTGA
AA sequence Show only first row Show all	>Potri.005G251700.3 pacid=42805044 polypeptide=Potri.005G251700.3.p locus=Potri.005G251700 ID=Potri.005G251700.3.v4.1 annot-version=v4.1 MMEDGVLSPGMMLGAAVDSAMDFDYMDELLLEGCWVETTDGSEFLNPSLSNSAALFDPSFMWPSPEMNNGNPASSLSQKGSQEVSHIPLLPGNSPSDIQS RSPVGEIAVSAAGWEYNATEGSELGKRWWIGPAPNPSPGTTVKRRLIKAVECIKDLTKNKDVLIQIWVPVNRGGRRVLTTHDQPFALDPSSERLASYRDI SVKYQFSAEKDSKDSVGMPGRVFLGKVPEWTPDVRFFRNDEYPRVNHAQQCDVRGTLALPVFEQGSRTCLGVIEVVTTSQKIKYLPELESVCKALEAVDL RSSEVPSIQNLKACDMSYQAALPEIQKVLRAACETHRLPLAQTWVPCIQQGKGGCRHSNENYYHCVSTVDDACCVGDPAFQGFLEACSEHHLLKGQGVVG EAFMTNQPCFSGDVTLYGKTEYPLSHHARIFGLCAAVAIRLRSMYTGTTDFVLEFFLPVDCRDPQEQKTMLTSLSIIIQRVCQTLRVVTVKELEEETDLP VSEVLVPSDGRSSGEETSTVKESYSERNARDNSPWTACLLKVQQSESNASLSEKDKEKVMCEKSFESRHNQEDYSLRGSTKYGGDSTSAEGSFSSVCKTK PGEKRRAKTEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKVSHSLQKLQCVIDSVEGAPGSVQIGSFYENFPELASPNSSR NSSLSTLNPSSHPKPSGIQLEGGTFSSHVAEPKSPSPSCSLSSSSSHSYSSTTQQYPSAITVSASEDPKLGENLGSGVLKKIRSNAELHASILEERKLML RSQSHTTLTELGNRPPLPKDSSRLSQEMDGHRVKVSFRNDKIRLRMPNNWVFKDLLQEIIRRFNLDDMHRYDLKYLDDDSEWVLLACDDDLEECIDVCGS GDNQTIKLLIEVSPHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.005G251700 [exp]	0	1
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.004G063000 [exp]	2.44	0.6358
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	4.69	0.6088	NPGR2.2
					Potri.001G060300 [exp]	14.14	0.5626
AT5G13560			unknown protein		Potri.008G048100 [exp]	15.00	0.4915
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	22.18	0.5569
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.018G008400 [exp]	40.98	0.5190
AT5G49470			PAS domain-containing protein ...		Potri.008G105100 [exp]	41.15	0.5256
AT5G06350			ARM repeat superfamily protein...		Potri.011G096201 [exp]	43.58	0.4723
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.002G152300 [exp]	44.54	0.5130
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Potri.006G190700 [exp]	45.89	0.4328

Compare expression of checked genes

Potri.005G251700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.