Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38350 1737 / 0 Patched family protein (.1.2) AT1G42470 1695 / 0 Patched family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009600 [exp] 2322 / 0 AT4G38350 1726 / 0.0 Patched family protein (.1.2) Potri.009G167000 [exp] 1798 / 0 AT4G38350 1679 / 0.0 Patched family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016019 [exp] 1890 / 0 AT4G38350 1711 / 0.0 Patched family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0322 [poplar] [flax] RND_permease PF02460 [poplar] [flax] Patched Patched family CL0644 [poplar] [flax] Fz PF16414 [poplar] [flax] NPC1_N Niemann-Pick C1 N terminus
Representative CDS sequence Show only first row Show all	>Potri.005G251800.1 pacid=42804991 polypeptide=Potri.005G251800.1.p locus=Potri.005G251800 ID=Potri.005G251800.1.v4.1 annot-version=v4.1 ATGACGCTGATTGCAATGGAGTTCTCAAGCAAGACAATGAAGCTTCTTCTGCTTTGGATTTCTTTCTTTCAGGTGTTATTTGTTGTATCTATAGTCCGCG GGGAGAGGTCTGATACTCGGTTGCTTCTGACACGGAATGCAGTATCTAGGGAGAGACACTCAGAGGAATATTGTGCAATGTATGATATTTGTGGAGCACG TGAAGATGGGAAAGTTTTGAACTGCCCTTATGGTTCCCCTTCTGTGAAGCCAGATGACTTGCTTTCACAAAAGATCCAAAGCTTGTGTCCTACAATTACT GGCAATGTTTGTTGTTCAGAAGCTCAGTTCGACACGTTACGGTCACAAGTTCAGCAAGCAATTCCATTTCTGGTTGGCTGTCCAGCATGTTTGAGAAACT TTTTGAATTTGTTCTGTGAGCTTACATGCTCTCCACATCAGAGCACGTTTATCAATGTCACCACTACGGCTAAGGTTAAAGGCAATTTGACCGTGAGTGG CATTGATTTTTATGCATCTGATGCTTTTGGTGAAGGGTTGTATGAATCTTGCAAGGACGTAAAGTTTGGGACCATGAACACTCGAGCTCTAAATTTTATT GGTGCTGGTGCTCAAAATTTTACAGAGTGGTATGCATTTATTGGTAGACGAGCCCCACTTGATGTGCCAGGCTCACCATATGCTATGATATTCAAGCCTA CTGCTCCTGAGTCATCTGGAATAAAACCCATGAATGTTTCTACATATTCATGTGGTGATATTTCGTTGGGCTGTTCTTGCGGTGATTGCCCTCAATCTCC TGTTTGTGCCAATACTGCTCCTCCTCCCCATCACGAAGGGGGTTCTTGTGCAGTGAGAATTGGATCTCTCAAGGCCAAATGTGTCGACTTTGCTCTAACA ATCCTTTATATTATATTGATTTCCATGTTTTTGGGATGGGGTTTGTTTCATCGAAAAAGAGAAAGGAACCAGACTTCTAGAATGAATCCACTGTCGGATA TCAAGGACAGTGGTGAAGTTATCAGGAAGAAGGATGAGAACCTTCCTGCTCAGATGGTTGAAGATTCTCCACAAACTGGAAGCAGGGTACAGCTTTCAAT CGTGCAAGGATATATGTCAAAGTTCTACAGGAGATATGGAACATGGGTTGCTAGAAATCCAATCCTTGTGTTGAGCTTGTCATTGGCTGTAATTCTTCTA CTTTGTGTAGGCCTCATCCGTTTCAAGGTGGAGACACGGCCTGAGAAGCTATGGGTAGGGCCCGGGAGTAAAGTTGCTGAAGAGAAACGTTTTTTTGACA CTCACCTAGCCCCTTTCTACAGAATTGAGCAGCTAATTCTAGCGACTGTTCCAGATGCCGGGGCACAGAAATTGCCAAGTATTGTGACAGAAGACAACAT CAAATTACTTTTTGAAATACAAAAAAAGGTTGATGGAATCCGTGCAAATTACTCTGGATCAATGGTATCTCTGACTGATATTTGCATGAAGCCACTGGAC AAAGATTGTGCCACTCAAAGTGTACTACAGTACTTCCAAATGGATCCTCAAAACCTTGAAAATTATGGAGGAGTTGAGCATGTGAATTACTGTCTCCAGC ATTATACCTCTGCAGACACTTGTAGGAGTGCCTTCAAAGCTCCCCTTGATCCAAGCACTTCCTTGGGAGGTTTCTCAGGGAATAATTATTCGGAGGCATC CGCATTTATTGTAACTTATCCAGTAAACAATGTGATTGATAAAGAAGGGAATGAAACTGATAAGGCTGTTGCTTGGGAGAAGGCTTTTATTCAGTTAGTG AAGAACGAATTATTGCCAATGGTGCAGTCGAAGAATCTCACCCTTTCTTTTTCATCGGAAAGCTCCATCGAGGAGGAATTAAAAAGGGAAAGTACCGCAG ATGTCATTACTATTTTGATTAGCTATCTTGTGATGTTTGCCTACATATCTCTTACTCTGGGTGACGCACCTCATTTATCTTCATTTTACATTTCATCTAA GGTGCTGCTTGGTCTATCTGGAGTTATGCTTGTCATGCTCTCTGTTCTTGGATCCGTAGGATTTTTTAGTGCCATTGGAGTAAAGTCTACATTAATCATC ATGGAAGTTATTCCTTTTCTTGTATTAGCTGTTGGGGTGGATAACATGTGCATATTGGTGCATGCTGTTAAGCGGCAACCATTGGAGTTGCCACTAGAAG GACGAATAAGCAATGCTCTTGTCGAAGTTGGACCATCCATCACACTTGCTAGTCTATCTGAAGTTTTAGCATTTGCAGCTGGAAGTTTCATTCCTATGCC GGCATGCCGTGTGTTCTCTATGTTTGCTGAACTTGCTGTTCTTTTGGACTTCCTTCTGCAAGTTACAGCTTTTGTAGCTTTGATAGTTTTTGATTTTTTG CGAGCGGAGGATAAGAGAGTCGATTGCATTCCGTGTATGAAAATTTCATCATCATATGCAGACACTCCTAAAGGAATTGGTGGGAGAAGACCTGGATTGC TGGCACGTTATATGAGGGAGATCCATGCACCCATACTCAGTCTTTGGGGAGTTAAGATAGCAGTCATTTCCATCTTTGCTGCTTTCACATTGGCCTGCAT AGCATTAACCACTCGAGTTGAACCTGGTTTGGAACAACAAATTGTTCTTCCTCAGGACTCATATCTTCAGGGTTATTTTAATAATGTTTCAGAGTATCTC AGAATTGGCCCACCGCTATATTTTGTAGTTAAGAACTACAATTATAGCTCAGAATCAAGTCATACAAATCAGTTGTGCTCCATCAGCCAATGCGGTTCAA AATCTCTTTTAAATGAGATTGCAAGAGCATCATTAACACCAGAATCTACCTATATAGCTATGCCAGCTGCTTCATGGCTTGATGATTTTCTTGTATGGAT ATCTCCAGAAGCTTTTGGATGCTGTAGGAAGTTCACAAATGGGAGTTATTGCCCCCCTGATGATCAGTTTCCTTGTTGTTCATCTGATACAGGCTCATGT GGTCTTGGTGGGGTGTGCAAAGATTGTACTACGTGCTTCCGTCACTCCGATCTGAATAATGATCGTCCATCTACATCACAATTCAAAGAGAAACTCCCAT TGTTCTTCAATGCTTTGCCCTCTGCTGATTGTGCCAAAGGTGGCCATGGTGCTTACACTAGCAGTATAGATCTGCAAGGCTACGAGAATGGTGTTATTCA AGCATCATCCTTCCGCACATATCACACACCTCTTAACAAGCAGATTGACTACGTCAATTCAATGAGGGCTGCTCGAGAGTTCAGTTCGAGGGTTTCTGAT TCTTTGAAGATGGAGATCTTCCCATACTCTGTATTTTATATGTTTTTTGAACAATACCTTGATATATGGAGGACCGCATTGATCAACCTTGCCATAGCTA TTGGAGCTGTATTTGTTGTTTGCTTGGTCATCACTTGCAGTTTATGGAATTCTGCGATCATTTTGCTGGTGTTGGCAATGATAGTCGTGGATCTGATGGG TGTGATGGCAATTCTGAATATTCAACTGAATGCAGTCTCTGTTGTCAACCTTGTCATGTCAGTGGGCATTGGTGTTGAGTTTTGTGTGCATATAACACAT GCTTTCTCGGTGAGTTGTGGTGATAGAGACCAGCGCGTAAGGGATGCTTTGGGTACAATGGGAGCTTCTGTCTTCAGTGGCATCACGTTAACAAAGCTAG TTGGCGTGATTGTTCTTTGCTTCTCAAGGACGGAAGTTTTTGTGGTCTACTACTTCCAAATGTACCTCGCACTGGTTCTTCTTGGTTTCTTGCATGGGCT GGTGTTCTTACCGGTTGTTCTGAGCATGTTCGGTCCACCTTCAAGATGTAAACTTGTCGAGAAGCAAGAAGACCGGCTATCAGTTTCCTTGAGGCCCTGA
AA sequence Show only first row Show all	>Potri.005G251800.1 pacid=42804991 polypeptide=Potri.005G251800.1.p locus=Potri.005G251800 ID=Potri.005G251800.1.v4.1 annot-version=v4.1 MTLIAMEFSSKTMKLLLLWISFFQVLFVVSIVRGERSDTRLLLTRNAVSRERHSEEYCAMYDICGAREDGKVLNCPYGSPSVKPDDLLSQKIQSLCPTIT GNVCCSEAQFDTLRSQVQQAIPFLVGCPACLRNFLNLFCELTCSPHQSTFINVTTTAKVKGNLTVSGIDFYASDAFGEGLYESCKDVKFGTMNTRALNFI GAGAQNFTEWYAFIGRRAPLDVPGSPYAMIFKPTAPESSGIKPMNVSTYSCGDISLGCSCGDCPQSPVCANTAPPPHHEGGSCAVRIGSLKAKCVDFALT ILYIILISMFLGWGLFHRKRERNQTSRMNPLSDIKDSGEVIRKKDENLPAQMVEDSPQTGSRVQLSIVQGYMSKFYRRYGTWVARNPILVLSLSLAVILL LCVGLIRFKVETRPEKLWVGPGSKVAEEKRFFDTHLAPFYRIEQLILATVPDAGAQKLPSIVTEDNIKLLFEIQKKVDGIRANYSGSMVSLTDICMKPLD KDCATQSVLQYFQMDPQNLENYGGVEHVNYCLQHYTSADTCRSAFKAPLDPSTSLGGFSGNNYSEASAFIVTYPVNNVIDKEGNETDKAVAWEKAFIQLV KNELLPMVQSKNLTLSFSSESSIEEELKRESTADVITILISYLVMFAYISLTLGDAPHLSSFYISSKVLLGLSGVMLVMLSVLGSVGFFSAIGVKSTLII MEVIPFLVLAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLSEVLAFAAGSFIPMPACRVFSMFAELAVLLDFLLQVTAFVALIVFDFL RAEDKRVDCIPCMKISSSYADTPKGIGGRRPGLLARYMREIHAPILSLWGVKIAVISIFAAFTLACIALTTRVEPGLEQQIVLPQDSYLQGYFNNVSEYL RIGPPLYFVVKNYNYSSESSHTNQLCSISQCGSKSLLNEIARASLTPESTYIAMPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQFPCCSSDTGSC GLGGVCKDCTTCFRHSDLNNDRPSTSQFKEKLPLFFNALPSADCAKGGHGAYTSSIDLQGYENGVIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSD SLKMEIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFVVCLVITCSLWNSAIILLVLAMIVVDLMGVMAILNIQLNAVSVVNLVMSVGIGVEFCVHITH AFSVSCGDRDQRVRDALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSMFGPPSRCKLVEKQEDRLSVSLRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	0	1
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.004G181700 [exp]	1.73	0.7304	PtrEXLA1,EXLA1.2
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.018G045100 [exp]	2.00	0.7174	HB1.5
AT3G21620			ERD (early-responsive to dehyd...		Potri.014G156100 [exp]	2.82	0.6842
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.006G222200 [exp]	3.16	0.6373
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.012G107100 [exp]	5.91	0.6154
AT4G20300			Protein of unknown function (D...		Potri.003G157500 [exp]	15.00	0.7047
AT1G80610			unknown protein		Potri.001G313900 [exp]	19.41	0.5756
AT5G59070			UDP-Glycosyltransferase superf...		Potri.009G038400 [exp]	20.12	0.5725
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	25.29	0.5638	HMT1,SMTA.1
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.012G126400 [exp]	28.37	0.5482	Pt-SKS1.2

Compare expression of checked genes

Potri.005G251800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.