Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) AT2G17220 436 / 1e-151 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 404 / 2e-138 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G02290 401 / 4e-138 NAK Protein kinase superfamily protein (.1.2) AT2G28930 399 / 5e-137 APK1B protein kinase 1B (.1.2.3) AT1G07570 393 / 1e-134 APK1A Protein kinase superfamily protein (.1.2.3) AT3G28690 387 / 2e-132 Protein kinase superfamily protein (.1.2.3) AT5G15080 387 / 5e-131 Protein kinase superfamily protein (.1) AT2G39660 383 / 6e-131 BIK1 botrytis-induced kinase1 (.1) AT3G01300 385 / 3e-130 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009400 [exp] 655 / 0 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.007G062700 [exp] 471 / 6e-165 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 457 / 1e-159 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 456 / 5e-159 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 441 / 3e-153 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.001G240400 [exp] 397 / 4e-136 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 395 / 2e-135 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 394 / 4e-135 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.010G093700 [exp] 394 / 8e-135 AT2G02800 627 / 0.0 protein kinase 2B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012256 [exp] 523 / 0 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 519 / 0 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10030743 [exp] 496 / 1e-174 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1) Lus10024512 [exp] 465 / 2e-162 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 448 / 1e-155 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 437 / 2e-151 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10013223 [exp] 428 / 8e-150 AT1G76360 400 / 8e-139 Protein kinase superfamily protein (.1) Lus10001392 [exp] 432 / 9e-150 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 439 / 4e-144 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 434 / 3e-137 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G251900.1 pacid=42804891 polypeptide=Potri.005G251900.1.p locus=Potri.005G251900 ID=Potri.005G251900.1.v4.1 annot-version=v4.1 ATGGGAAATTGTTGGGGAAGTACTCCTGTGACCAATCATAATAGCCCTTCTGCTACCAAGCCTTCTACTCCAAAAACATCAGCAAACCACAGCAAAGAAA ATGGACTGGGGGGCAGAAGCAGCAGCGACCGTAAAGAGAAAGAAAGCGTCAAGATTAATGGTATGTATGTGAAGAACAAAGACAAGGATAGAACAGCTAT AATTCCTCCTAGAGGACAGGTCATGGCAATATTGGGACCAAAATTGTTCACTCTGGCAGAGCTGAAGAGTGCTACCAGGAATTTTAGACCTGATACTGTG CTAGGGGAAGGTGGGTTCGGCAGGGTTTTTAAAGGTTGGGTCGATGAAAAGACCTATGCACCGGCTAAAGTTGGCTGTGGAATGGCTGTAGCTGTTAAGA AATCGAACCCAGACAGCTCTCAAGGCCTGCAGGAGTGGCAGTCTGAAGTGAAGTTATTGGGAAAATTTTCTCATCCAAACCTCGTCAGACTCTTAGGTTA CTGCTGGGAGGAAAACCAGTTCCTTCTTGTCTACGAATACATGCAGAAGGGAAGCTTGGAAAAGCACCTTTTCAGAAAGGGGGCAGAACCGCTTCCATGG AACGTTAGAATTAAAATAGCAATTGGAGCTGCAGAAGGTCTTGCCTTCCTTCACACATCAGAAAAGAGTGTCATTTATCGAGACTTTAAGACATCTAACA TTTTATTGGATGGGGCCTTCAACGCTAAACTTTCAGACTTTGGGCTGGCAAAGTTTGGTCCTTTAAACGGCAACTCCCATGTTACAACAAGGGTCATGGG CACATACGGTTATGCAGCTCCAGAATATGTCGCTACTGGGCATTTGTACGTCAAGAGTGATGTCTACGGTTTTGGTGTTGTGTTACTGGAATTGTTGACG GGCCTAAAAGCCCTTGACACCAATCGGCCGATTTGGCAGCAAAATTTGGTAGAGTTTGCTAGGCCTTCTCTTTCCGATAAAAGAAAACTGAAGAAAATAA TGGATCCAAGACTCGAAGAGCAGTACCCTATAAAAGCTGCAGTGCAAGCAGCTGAACTTATACTACAATGCTTGGAATCTGACCCAAAAAGTAGACCATC CATGGAAAAGGTTTTGGAGACCTTAAAAAAGATAGATGACACGAAGGATGTGTCCAAGGACAGCAAAGGCAGTGCCAAGAAAAAAGCTACAAAGCGACAA GAAGAGCATTACCGCCATCAGTCTCCACTTCAGTCCAGACATGGTGGCACTGGCAACAACGGTCGAGCCCACTCCTCAGCCTATGTCGGTTCATATCAAT CAACGGGTGCCCGTAGGCCATTATATTTTGCTAATCACTTGTAG
AA sequence Show only first row Show all	>Potri.005G251900.1 pacid=42804891 polypeptide=Potri.005G251900.1.p locus=Potri.005G251900 ID=Potri.005G251900.1.v4.1 annot-version=v4.1 MGNCWGSTPVTNHNSPSATKPSTPKTSANHSKENGLGGRSSSDRKEKESVKINGMYVKNKDKDRTAIIPPRGQVMAILGPKLFTLAELKSATRNFRPDTV LGEGGFGRVFKGWVDEKTYAPAKVGCGMAVAVKKSNPDSSQGLQEWQSEVKLLGKFSHPNLVRLLGYCWEENQFLLVYEYMQKGSLEKHLFRKGAEPLPW NVRIKIAIGAAEGLAFLHTSEKSVIYRDFKTSNILLDGAFNAKLSDFGLAKFGPLNGNSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLELLT GLKALDTNRPIWQQNLVEFARPSLSDKRKLKKIMDPRLEEQYPIKAAVQAAELILQCLESDPKSRPSMEKVLETLKKIDDTKDVSKDSKGSAKKKATKRQ EEHYRHQSPLQSRHGGTGNNGRAHSSAYVGSYQSTGARRPLYFANHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	1.00	0.9380	Pt-LHT1.2
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	4.00	0.9140
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	5.00	0.8997
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	7.41	0.8948
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	7.48	0.8965
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.016G066700 [exp]	8.06	0.8943	Pt-CDPK5.5,CPK19
					Potri.005G040650 [exp]	8.94	0.8836
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.001G070900 [exp]	11.66	0.8901
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	12.00	0.8968
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	13.49	0.8709

Compare expression of checked genes

Potri.005G251900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.