Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20650 532 / 0 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G76370 492 / 1e-174 Protein kinase superfamily protein (.1) AT5G18610 462 / 4e-161 Protein kinase superfamily protein (.1.2) AT5G02800 448 / 2e-157 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 432 / 3e-151 Protein kinase superfamily protein (.1) AT5G13160 435 / 4e-151 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G07070 427 / 1e-148 Protein kinase superfamily protein (.1) AT3G20530 412 / 4e-143 Protein kinase superfamily protein (.1) AT4G13190 405 / 1e-140 Protein kinase superfamily protein (.1) AT1G07870 406 / 2e-140 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009300 [exp] 670 / 0 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 472 / 1e-164 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 470 / 6e-164 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 454 / 5e-160 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 452 / 7e-159 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 454 / 2e-158 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 449 / 1e-157 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 440 / 4e-153 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 424 / 1e-147 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016021 [exp] 529 / 0 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10030741 [exp] 527 / 0 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012249 [exp] 508 / 1e-167 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10033966 [exp] 469 / 1e-163 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 469 / 1e-163 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 453 / 4e-158 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10023473 [exp] 444 / 2e-155 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 444 / 2e-155 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 444 / 2e-155 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 432 / 2e-151 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G252000.7 pacid=42805202 polypeptide=Potri.005G252000.7.p locus=Potri.005G252000 ID=Potri.005G252000.7.v4.1 annot-version=v4.1 ATGAGGATGAGATGCTTTTCTTGCATAAAACCAAATCGAAACGATATTAAGATCGACACTGAACACGCCCCTCGATCTAGTTCTCGATGTTCTTATGGGT CCTCAGGTGTGGGATTTGTAGGTACCCAGAACGCAAGGTTTAATGTAAATGAACATGGGAAGAATCAGAGTCCTGAGGACGGGGCTCGTAGTTTTACATT TCGTGAGCTTGCAGCAGCAACAAGAAATTTTAGAGAGGTTAATTTGATTGGTGAAGGAGGTTTCGGCAGGGTTTATAAAGGCCGGTTAGAAACAGGGGAG CTTGTCGCGGTGAAACAACTTAATCAGGATGGTCTTCAGGGGGATCAGGAATTTATCGTGGAGGTTCTTATGTTGAGTCTGTTACACCATTCCAATCTTG TTACCTTGACTGGCTACTGTACTTCTGGTGATCAGAGACTATTGGTTTATGAATACATGCCGATGGGTAGTTTGGAAGATCATCTTTTCGATCTAGAACC TGGTAAAGAGCCATTAAGTTGGAGCACTCGGATAAAGATCGCTGTAGGTGCTGCCCGGGGTCTCGAGTACCTACACTGTAAAGCAGACCCACCTGTTATT TACCGTGACCTGAAATCTGCGAACATCTTGCTGGACAATGATTTCCAACCAAAACTATCAGATTTTGGAATTGCAAAATTGGGACCTGTTGGTGAAAATA CACATGTTTCAACCAGAGTTATGGGGACATATGGATATTGCGCTCCAGAGTATGCCATGAGTGGCAAGTTGACTCTGAAGTCTGATATTTATAGTTTTGG TGTTGTTTTGTTGGAGTTGATCACTGGGAGAAAGGCCATAGATCGTTCTAAGAAGCCAGGAGAGCAAAACTTAGCTGCCTGGTCTCAGCCGTTCTTGAAG GACCAGAAGAAATATTGCCAATTGGCTGATCCTCTGTTGGAAGGGTGTTATCCTCGTCGTTGTTTCAACTATGCAATTGCTATAACTGCAATGTGCCTTA ATGAGCAAGCCAGTTTTCGCCCTCTTATTGGTGATATACTGGGTGCCTTGGAATATTTGGCTGCACAGTGCCATGTCTCAGAACCCAATACTGGTCGGGT ACGAGGTACCAATCCATCGTCACCATATTCTGACAGGAAGGTCGTTTCTCAAGAGCGAGATTCTAGGAGTAGAGCTTCTATTTGA
AA sequence Show only first row Show all	>Potri.005G252000.7 pacid=42805202 polypeptide=Potri.005G252000.7.p locus=Potri.005G252000 ID=Potri.005G252000.7.v4.1 annot-version=v4.1 MRMRCFSCIKPNRNDIKIDTEHAPRSSSRCSYGSSGVGFVGTQNARFNVNEHGKNQSPEDGARSFTFRELAAATRNFREVNLIGEGGFGRVYKGRLETGE LVAVKQLNQDGLQGDQEFIVEVLMLSLLHHSNLVTLTGYCTSGDQRLLVYEYMPMGSLEDHLFDLEPGKEPLSWSTRIKIAVGAARGLEYLHCKADPPVI YRDLKSANILLDNDFQPKLSDFGIAKLGPVGENTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDRSKKPGEQNLAAWSQPFLK DQKKYCQLADPLLEGCYPRRCFNYAIAITAMCLNEQASFRPLIGDILGALEYLAAQCHVSEPNTGRVRGTNPSSPYSDRKVVSQERDSRSRASI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.005G252000 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	2.82	0.7635
AT3G06890			unknown protein		Potri.010G013100 [exp]	3.00	0.7679
AT5G38700			unknown protein		Potri.014G123400 [exp]	3.46	0.7858
AT1G32120			unknown protein		Potri.001G132800 [exp]	4.69	0.7288
AT3G11760			unknown protein		Potri.018G027200 [exp]	5.09	0.7830
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.002G216800 [exp]	9.16	0.7401	Pt-RPM1.1
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	10.48	0.7332	CBP60.7
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	12.00	0.7284	PtrCSLD1,CESA3.2
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	12.24	0.6910
AT5G38344			Toll-Interleukin-Resistance (T...		Potri.013G097600 [exp]	13.00	0.7253

Compare expression of checked genes

Potri.005G252000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.