Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 431 / 3e-142 DNA-binding bromodomain-containing protein (.1) AT1G76380 395 / 2e-129 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 253 / 2e-72 DNA-binding bromodomain-containing protein (.1.2) AT3G01770 60 / 3e-09 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 57 / 3e-08 DNA-binding bromodomain-containing protein (.1) AT1G32750 54 / 4e-07 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT3G54610 52 / 2e-06 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT5G14270 50 / 7e-06 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT2G34900 48 / 9e-06 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G52280 48 / 1e-05 GTE6 general transcription factor group E6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009100 [exp] 938 / 0 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 367 / 2e-116 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 345 / 5e-108 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 133 / 5e-32 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 127 / 2e-30 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 119 / 1e-27 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 64 / 2e-10 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 63 / 6e-10 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 58 / 2e-08 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013220 [exp] 463 / 9e-155 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 447 / 1e-148 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10022999 [exp] 292 / 2e-90 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 288 / 1e-88 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 260 / 6e-75 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 250 / 2e-71 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10011989 [exp] 54 / 3e-07 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002718 [exp] 52 / 2e-06 AT3G54610 704 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Lus10033623 [exp] 52 / 2e-06 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 52 / 2e-06 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.005G252200.2 pacid=42803913 polypeptide=Potri.005G252200.2.p locus=Potri.005G252200 ID=Potri.005G252200.2.v4.1 annot-version=v4.1 ATGGGGGAGATCGCAGACATGCCAGACACAACAATGAAGAAGAAGAAAAAAGGAAGACCTTCTCTTTTAGAGCTTAAAAAACGCTCTCTCAAGCAGCAAC AGCAACAACAAGAAAGCCCTAATTACCTTGAAAACCCTAATTCTCTCAATTCCAATCCCGTCCTTCCTAACCGTCGATCCTCTCGCCGGAGCTCTAATTC TTATGCACCTGAATGGATTGATGGAGACGACGACGAAGAAGACGATGAAGACGATGAGCGTAAAGAGAAGAAGCACAAGCTCTTGCGAGGATTGAATTCT CAAAAAAATAACAACAAGAATTCCAATACGTTGCCTCCTTCAAACTCTGATTCGAATGCTGGTGGCGGTAATCACGAGGAGGGAATTAGGAGGCGCAAGA TCAGCGCCGTCCGTCTTGGATCTGATGATTTGGATGAAAAGGTTTTGAAAGGGACAGACACTCTTCATGGGTCATCGGTGGAGCCGGGTCCCACTACACC TTTGCCAGACAAAAAGTTGTTGGTCTTCATTCTTGACAGACTTCAAAAGAAGGACACTTATGGGGTTTTCTCTGAGCCAGTGGATCCAGAAGAGCTTCCT GATTACTTCGAGATCGTTGAGAATCCCATGGATTTTTCTACAGCGAGGAAAAAGTTAGATGAGGGAGCCTACACCAACTTGGAACAGTTTGAGGTAATGC AACTGACTGCATTTACAGAGAGTATTTTGATTCTTTCCGAGAAAGATGTTCTTTTGATATGTTCAAATGCAATGCAATACAACTCCGCCGATACTATTTA CTATCGACAGGCACGGGCCATGCAAGAGATTGCAAAGAAGGACTTTGAACATCTTAGGCAAGATAGTGATGATAGTGAACCACAACCCAAAGTTGTGAGG AGAGGGAGGCCACCTGGCACAGGCAAGCTGAAAAATGCACTTGAGAGGTCGCCTGTTGATCGTGTTGGTCCTGAAGCATCCTCGGATGCAACTCTTGCCA CTGGAGGAGATAATAATAGCTTGTCCAATGGTTACAATCTCAGAAGAAGTTCTTCATACAAGTACCAGCCTGCTGATTCATTGGTCAGGGCCTCTCATGG GTCCCACAACAACGAAAATCATTCTACCTGGTTATCTGAATGGGAAAATGAATTTCCAGCTTCTGTTGTGAAGGCCGTGATAAAGTATGGGAAGAAACCG ATTGTGCTAGACGAGAACAAGCGTGACACCTATAAGCATCCACTGGACTCCCATGAGCCATCTGTCTTGATGACCTTTGATGGAGAATTAAAGCAACTCA TGGCGGTAGGTTTAAGCTCTGAGCATGGTTATGCAAGAAGTCTCGCTCGATTTGCTGCTGATCTCGGGCCTGTTGTCTGGAGAATGGCTTCAAAGAAAAT TGAAAGTGTCTTGCCAACAGGAATTGAGTTTGGCCCTGGGTGGGTAGGAGAAAATAAAGCAATGGAGAAGCATAAGGTTTCAAACAGCCCCATATCTGAT AACCATTTAAGCAGATTTCAACCTGCAACTTCCTTGAGTAGAGATGCGACATGGACTAAAGAAGACATGCTAGAAACTGTTGGTGGATTAAATTCTAAAA ATGAGTTAACTACACTGAACAGTGCTACTGGTGGGATGAAATCTTTGCCTACTGTCTCGATTCAGCAGAAACCGATGATTCATCCTGATATGAATGGTTT CAGTGGAGGATTTGGATATAATTCTTCATCTCAAATAGGGATGGCGCGGCCTGTGGCACCTACAGGAAAGTTCAGTTTGGAGAAGCTGCACCCTGCAGTG CCATCCCAAATGTTTGGTGCGGTTCCACCTAGTAACAGCACCTTCATTTCAATGCCTGGGAACAATTTAAATTCGAATAAGGCTATGCTGTCAGAAACTT CAGGTGGATTATTGCAGTCTGGAATTTCTGCAGCTGTAGGGTCCAGCTCTGACTCTCATACATTACGCAATGTGGGGTTTGGTGGGAAATCATCTTGGCA GGGATTTTTACCCTATCATCAACAAGGTACTGTTCCATTTCCACCAGACCTGAACGTTGGATTCATGGCACCTGGCTCACCTTCTTCCAGCGTGCCAATT GGTTCACCACGGCAGCCAGATTTAGTATTGCAGCTCTGA
AA sequence Show only first row Show all	>Potri.005G252200.2 pacid=42803913 polypeptide=Potri.005G252200.2.p locus=Potri.005G252200 ID=Potri.005G252200.2.v4.1 annot-version=v4.1 MGEIADMPDTTMKKKKKGRPSLLELKKRSLKQQQQQQESPNYLENPNSLNSNPVLPNRRSSRRSSNSYAPEWIDGDDDEEDDEDDERKEKKHKLLRGLNS QKNNNKNSNTLPPSNSDSNAGGGNHEEGIRRRKISAVRLGSDDLDEKVLKGTDTLHGSSVEPGPTTPLPDKKLLVFILDRLQKKDTYGVFSEPVDPEELP DYFEIVENPMDFSTARKKLDEGAYTNLEQFEVMQLTAFTESILILSEKDVLLICSNAMQYNSADTIYYRQARAMQEIAKKDFEHLRQDSDDSEPQPKVVR RGRPPGTGKLKNALERSPVDRVGPEASSDATLATGGDNNSLSNGYNLRRSSSYKYQPADSLVRASHGSHNNENHSTWLSEWENEFPASVVKAVIKYGKKP IVLDENKRDTYKHPLDSHEPSVLMTFDGELKQLMAVGLSSEHGYARSLARFAADLGPVVWRMASKKIESVLPTGIEFGPGWVGENKAMEKHKVSNSPISD NHLSRFQPATSLSRDATWTKEDMLETVGGLNSKNELTTLNSATGGMKSLPTVSIQQKPMIHPDMNGFSGGFGYNSSSQIGMARPVAPTGKFSLEKLHPAV PSQMFGAVPPSNSTFISMPGNNLNSNKAMLSETSGGLLQSGISAAVGSSSDSHTLRNVGFGGKSSWQGFLPYHQQGTVPFPPDLNVGFMAPGSPSSSVPI GSPRQPDLVLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	0	1
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	1.41	0.7548
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178300 [exp]	4.00	0.7092
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	6.48	0.6949
AT2G14520			CBS domain-containing protein ...		Potri.001G288000 [exp]	10.39	0.6642
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.005G092800 [exp]	10.81	0.6348
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	11.83	0.7020
AT3G59090			unknown protein		Potri.002G058500 [exp]	20.39	0.6402
AT1G20670			DNA-binding bromodomain-contai...		Potri.002G009100 [exp]	23.21	0.6812	BRD901
AT5G01980			RING/U-box superfamily protein...		Potri.006G112100 [exp]	37.84	0.6904
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014338 [exp]	38.01	0.6650

Compare expression of checked genes

Potri.005G252200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.