Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01860 530 / 0 EMB975 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G25630 72 / 5e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G21222 64 / 2e-10 protein kinase family protein (.1) AT5G02860 62 / 4e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 59 / 5e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 58 / 1e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 56 / 6e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 56 / 7e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41170 54 / 2e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 53 / 5e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019000 [exp] 65 / 6e-11 AT1G10910 796 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G037200 [exp] 64 / 1e-10 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G081700 [exp] 64 / 2e-10 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.009G092100 [exp] 63 / 3e-10 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 63 / 5e-10 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050120 [exp] 58 / 5e-09 AT1G12700 295 / 3e-94 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.008G142900 [exp] 59 / 6e-09 AT5G13770 544 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G036400 [exp] 59 / 8e-09 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G211300 [exp] 58 / 9e-09 AT1G10910 773 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009057 [exp] 494 / 3e-172 AT2G01860 508 / 5e-178 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031347 [exp] 415 / 9e-143 AT2G01860 395 / 8e-136 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 67 / 2e-11 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10043417 [exp] 63 / 4e-10 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 60 / 4e-09 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034421 [exp] 59 / 9e-09 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 59 / 9e-09 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023650 [exp] 58 / 2e-08 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10026206 [exp] 57 / 3e-08 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034924 [exp] 56 / 7e-08 AT5G21222 599 / 0.0 protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.005G252300.1 pacid=42802600 polypeptide=Potri.005G252300.1.p locus=Potri.005G252300 ID=Potri.005G252300.1.v4.1 annot-version=v4.1 ATGTCCAAGGCAATGGACTGGAAGTTGACATCTATCAGTTTACACCCTATACTGCCAACGGCAAGTAATGTCTTAAAGAGCAGCAGCATGATTTTGATGG CACATTCCAGTACAAGAATCTGCTACAGAAAGATACCTAAAAACATTCGTTATCCGCGACGCTCCAAGCTTCCTCCTGATTTTGGGGTGAATTTGTTCTT GAAGAAGCCTCAAACAGATTCAGTTCAAGATCACAGTGATGACTTGACTGAAGAGGAGGAGGAGGAGGAAATTGAAGTAAATAATGGCGAGATAGTTTGG GAATCAGAAGAGATTGAAGCAATATCATCTCTTTTTCGGGGGAGAATCCCTCAAAAACCTGGGAAACTAGGTAGAGAAAGACCTCTCCCTCTTCCTGTTC CTTACAAGTTAAGACCTTTAGGACTTCCTGCACCGAAAAAACATGTTAATAAACAGGTTTCCTTGAGTCGGGCATCTATATCCAGTCAAATTTATAAGAA CCCAAGTTTTCTTATCGGTCTAGCCAAGGAGATTAAACGCCTTAGCCCAGATCAAGATGTGTCTGTAGTTCTTGATAATTGCTCTCGTTACCTGCACAAG GGGTCATTATCCTTAACAATTCGAGAGTTGGGTCATCTGGGTCTTCCTGAGAGAGCTCTGCAGACATTCTGTTGGGTTCAGAAGCAGCCTCGGCTTTTCC CTGATGATCGTGTTTTGGCTTCCACAGTTGAAGTTTTGGCAAGGAATCATGACTTGAAAGTGCCATTCAACTTGGAGAAGTTTACTAATTTGGCCAGCAG GCGAGTGATTGAAGCAATGGTTAAAGGGTTGATTAGAGGTGGTAGCTTAAAGCTTGCCTGGAAGCTTATTTCAGTTGCCAAGGATGGTAAAAGAATGTTA GACCCTAGTGTGTATGCAAAGATTATACTGGAGCTGGGGAAGAACCCCGATAAACATGTGCTTGCAGAAGCCTTATTGGATGAACTTGCGGAAAGAGAAG ATTTGAATTTAAGCCAGCAGGATTGTACTGCTGTAATGAAAGTTTGCATTAAGCTTGGGAAATTTGAAGCTGTGGAAAGCCTGTTTAACTGGTTTAGACA ATCTGGGCATGAGCCAAGCGTAGTTATGTACACTACTCTTATTCACAGTCGTTACTCAGAGAGTAAATATAGGGAGGCGTTGGCTGTAGTTTGGGAAATG GAGGGTTCAGATTGTCTCTTTGATCTCACGGCTTATCGTGTGGTTATAAAGCTTTTTGTTGCCTTGAATGATCTGCCGAGGGCTGTAAGATATTTTTCGA AACTCAAGGAAGCAGGCCTCTCTCCGACATATGACATATACAGGAACTTGATTACACTTTATATGGTTTCTGGGCGGCTGGCAAAGTGCAAGGAGGTGTG GAAGGAGGCAGAAATGGCAGGATTCAAGTTTAGCAAGGAAATGGCAGCAGGGTTGTTGCAACTCAAAAGAGAAACGAGGTTAGTTGAAACAAACACAGAG GAAACACAGACATTACCATTTTAG
AA sequence Show only first row Show all	>Potri.005G252300.1 pacid=42802600 polypeptide=Potri.005G252300.1.p locus=Potri.005G252300 ID=Potri.005G252300.1.v4.1 annot-version=v4.1 MSKAMDWKLTSISLHPILPTASNVLKSSSMILMAHSSTRICYRKIPKNIRYPRRSKLPPDFGVNLFLKKPQTDSVQDHSDDLTEEEEEEEIEVNNGEIVW ESEEIEAISSLFRGRIPQKPGKLGRERPLPLPVPYKLRPLGLPAPKKHVNKQVSLSRASISSQIYKNPSFLIGLAKEIKRLSPDQDVSVVLDNCSRYLHK GSLSLTIRELGHLGLPERALQTFCWVQKQPRLFPDDRVLASTVEVLARNHDLKVPFNLEKFTNLASRRVIEAMVKGLIRGGSLKLAWKLISVAKDGKRML DPSVYAKIILELGKNPDKHVLAEALLDELAEREDLNLSQQDCTAVMKVCIKLGKFEAVESLFNWFRQSGHEPSVVMYTTLIHSRYSESKYREALAVVWEM EGSDCLFDLTAYRVVIKLFVALNDLPRAVRYFSKLKEAGLSPTYDIYRNLITLYMVSGRLAKCKEVWKEAEMAGFKFSKEMAAGLLQLKRETRLVETNTE ETQTLPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	0	1
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	2.00	0.9627
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	2.00	0.9769
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	2.44	0.9659
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	3.16	0.9727
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G084000 [exp]	3.16	0.9503
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G243800 [exp]	4.24	0.9444
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	5.00	0.9627
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.001G258500 [exp]	5.19	0.9508
AT1G73090			unknown protein		Potri.010G250100 [exp]	5.29	0.9388
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	8.48	0.9619

Compare expression of checked genes

Potri.005G252300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.