Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20696 146 / 9e-46 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 141 / 7e-44 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT3G51880 105 / 1e-29 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT2G17560 99 / 2e-27 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 92 / 1e-24 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT5G23420 71 / 1e-15 HMGB6 high-mobility group box 6 (.1.2) AT2G34450 67 / 9e-15 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT4G11080 59 / 1e-10 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 58 / 2e-10 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT3G28730 45 / 4e-06 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009000 [exp] 164 / 1e-52 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 136 / 6e-42 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 115 / 3e-33 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 102 / 3e-28 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 76 / 1e-17 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.001G093700 [exp] 58 / 2e-10 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 57 / 3e-10 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.004G131400 [exp] 56 / 4e-10 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.004G091800 [exp] 42 / 7e-05 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012252 [exp] 140 / 2e-43 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 140 / 3e-43 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 142 / 1e-41 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10030738 [exp] 131 / 2e-39 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10028298 [exp] 118 / 6e-34 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 116 / 2e-33 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10013219 [exp] 106 / 3e-30 AT1G20693 165 / 2e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035511 [exp] 101 / 3e-27 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10016695 [exp] 88 / 2e-22 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035991 [exp] 86 / 4e-22 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Potri.005G252600.9 pacid=42803387 polypeptide=Potri.005G252600.9.p locus=Potri.005G252600 ID=Potri.005G252600.9.v4.1 annot-version=v4.1 ATGAAAGGAGGTAGATCAAAGTCAGATACTAAGAGCGCCAAGCTCTCTGTGACCAAGAAACCAACCAAAGGAGGAGGAGGAGGAGCTGCAGCCCGGAAAT CAGGAAAGGCAGCTAAGGATCCAAACAAGCCCAAGAGGCCTGCCAGTGCATTCTTCGTCTTCATGGAGGAGTTCAGAGAGCAGTACAAGAGGGAACACCC TAAAAACAAATCCGTTGCAGCTGTTGGAAAAGCTGGAGGAGATAAATGGAAGTCACTGTCAGAGGCTGAGAAAGCACCCTTTGTTGCCAAAGCGGACAAG AGGAAGGTTGAATATGAGAAGAAGATGAAAGCTTACAACAAGGAGCAGGCTGAAGGGCCCAAGGAAGAAGAGGAGTCTGAGAAGTCAATGTCAGAGGTCA ATGATGACGATGAAGATGATGAAGAGGGAAGTGGGGAGGAAGATGACGACGACGAGTAG
AA sequence Show only first row Show all	>Potri.005G252600.9 pacid=42803387 polypeptide=Potri.005G252600.9.p locus=Potri.005G252600 ID=Potri.005G252600.9.v4.1 annot-version=v4.1 MKGGRSKSDTKSAKLSVTKKPTKGGGGGAAARKSGKAAKDPNKPKRPASAFFVFMEEFREQYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADK RKVEYEKKMKAYNKEQAEGPKEEEESEKSMSEVNDDDEDDEEGSGEEDDDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G252600 [exp]	0	1
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	12.48	0.8358	HMGB901,Pt-HMGB3.2
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G067400 [exp]	13.41	0.7617
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.003G080400 [exp]	16.61	0.7146
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Potri.012G120400 [exp]	17.77	0.7718
AT4G12060			Double Clp-N motif protein (.1...		Potri.001G115500 [exp]	18.43	0.8146
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	18.97	0.7605	Pt-GLUR2.1
AT3G57930			unknown protein		Potri.003G211200 [exp]	26.00	0.7301
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	27.87	0.7938	HMGB915
AT5G59970			Histone superfamily protein (....		Potri.007G013300 [exp]	29.46	0.6794
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	39.91	0.6659

Compare expression of checked genes

Potri.005G252600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.