Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35550 196 / 6e-63 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT1G20700 167 / 5e-52 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT1G20710 134 / 2e-39 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT2G33880 71 / 4e-14 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT5G45980 69 / 7e-14 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT3G18010 64 / 5e-12 HD WOX1 WUSCHEL related homeobox 1 (.1) AT2G28610 61 / 3e-11 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT1G46480 59 / 2e-10 HD WOX4 WUSCHEL related homeobox 4 (.1) AT5G59340 59 / 3e-10 HD WOX2 WUSCHEL related homeobox 2 (.1) AT3G11260 57 / 5e-10 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008800 [exp] 401 / 2e-144 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.005G101800 [exp] 242 / 4e-81 AT4G35550 303 / 2e-104 WUSCHEL related homeobox 13 (.1) Potri.011G061400 [exp] 71 / 2e-14 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.004G051600 [exp] 68 / 3e-13 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.012G047700 [exp] 65 / 2e-12 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.015G039100 [exp] 64 / 7e-12 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.002G124100 [exp] 62 / 9e-12 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 62 / 1e-11 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.009G029200 [exp] 57 / 9e-10 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012250 [exp] 209 / 3e-66 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10016026 [exp] 204 / 3e-66 AT4G35550 149 / 4e-44 WUSCHEL related homeobox 13 (.1) Lus10040447 [exp] 183 / 5e-58 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10023561 [exp] 182 / 1e-57 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10005282 [exp] 70 / 1e-13 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10042007 [exp] 62 / 3e-11 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10016569 [exp] 62 / 3e-11 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10018011 [exp] 62 / 4e-11 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10024808 [exp] 60 / 1e-10 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10028271 [exp] 58 / 4e-10 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.005G252800.1 pacid=42805034 polypeptide=Potri.005G252800.1.p locus=Potri.005G252800 ID=Potri.005G252800.1.v4.1 annot-version=v4.1 ATGGAGGATGGAAAGTTTCAAAATGGAGGTGGGTTAGGTGTTAAAGTGATGACTGATGAGCAAATGGAGATGCTGAGGAAACAAATTTCTGTTTATGCCA CTATCTGTGAGCAGCTTGTTGAGATGCACAAGGCTCTCTCTGTCCACCAGGATTTTGCTGGCATGCGACTTGGGAATCCATACTTTTGCGATCCATTACT GTCATCTTCTGTCCACAAGATAGGGTCGAGGCAGCGGTGGACTCCAAAACCAGCGCAACTTGAAATCCTTGAGCAGATTTTCAAACAATGCAATGCGACT CCAGGCAGGCAGAAGATCAAAGATATAACCAAGGAACTTGCACAACATGGCCAGATTTCTGAAACAAATGTCTATAATTGGTTCCAAAATAGGAGAGCTC GTTCAAAAAGAAAGCAATCAGCTTTACTACCAAACAGTGGAGAATCTGAAGTAGAGACAGAAATTGAGCCTTTTAAAGAGAAGAAGACCAAGCCAGAAGA CAACCAACCTGATGAAGACGCCACCCCAGTGTCCGACCACATGTACTTGCATAGCCCAGACATAGGAATAGACCAGCTGGTTGGGAAAATGGAATCCCCG GGGAGCTGTATTCCTTACTGGCAGCTGGAGCAATATGACTTGTTTGGATGA
AA sequence Show only first row Show all	>Potri.005G252800.1 pacid=42805034 polypeptide=Potri.005G252800.1.p locus=Potri.005G252800 ID=Potri.005G252800.1.v4.1 annot-version=v4.1 MEDGKFQNGGGLGVKVMTDEQMEMLRKQISVYATICEQLVEMHKALSVHQDFAGMRLGNPYFCDPLLSSSVHKIGSRQRWTPKPAQLEILEQIFKQCNAT PGRQKIKDITKELAQHGQISETNVYNWFQNRRARSKRKQSALLPNSGESEVETEIEPFKEKKTKPEDNQPDEDATPVSDHMYLHSPDIGIDQLVGKMESP GSCIPYWQLEQYDLFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.005G252800 [exp]	0	1
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	19.18	0.8510
AT3G54290			unknown protein		Potri.008G019700 [exp]	23.32	0.8408
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.015G099600 [exp]	24.71	0.8047
AT1G66910			Protein kinase superfamily pro...		Potri.017G116900 [exp]	28.08	0.7558
AT1G21480			Exostosin family protein (.1.2...		Potri.002G072300 [exp]	38.70	0.8325
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	42.28	0.8350
AT3G06840			unknown protein		Potri.003G073200 [exp]	44.63	0.8142
AT4G24780			Pectin lyase-like superfamily ...		Potri.012G091500 [exp]	56.12	0.8197
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.003G005900 [exp]	56.33	0.8161
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.010G070600 [exp]	59.79	0.7748

Compare expression of checked genes

Potri.005G252800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.