Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20760 629 / 0 Calcium-binding EF hand family protein (.1) AT1G21630 424 / 5e-130 Calcium-binding EF hand family protein (.1.2) AT4G05520 81 / 1e-15 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 76 / 5e-14 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008600 [exp] 1481 / 0 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G102200 [exp] 629 / 0 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 617 / 0 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 85 / 1e-16 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 76 / 9e-14 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.002G008300 [exp] 52 / 3e-08 AT1G20760 57 / 5e-11 Calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012248 [exp] 998 / 0 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016028 [exp] 861 / 0 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016689 [exp] 412 / 1e-125 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10035983 [exp] 338 / 1e-104 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10035982 [exp] 278 / 2e-81 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10043181 [exp] 82 / 1e-15 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 81 / 2e-15 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF12763 [poplar] [flax] EF-hand_4 Cytoskeletal-regulatory complex EF hand
Representative CDS sequence Show only first row Show all	>Potri.005G253000.4 pacid=42804542 polypeptide=Potri.005G253000.4.p locus=Potri.005G253000 ID=Potri.005G253000.4.v4.1 annot-version=v4.1 ATGGCGCTGCCAAACATGGATGTATTCGAAGCTTACTTCAAGAGAGCTGATTTAGATGGAGATGGAAGAATTAGTGGAGCTGAAGGTTTTTCTTTCTTTC AAGGATCCAATTTGCCCAAACAAGTCCTTGCTCAGATATGGATGCATGCTGATCAGAGTCGCAGTGGCTTCCTTGGCCGGCCGGAATTTTTTAATGCTCT TAGACTTGTAACTGTTGCACAGAGTAAGCGAGATTTGACACCGGATATTGTCAAGGCGGCATTATATGGGCTAGCTGCAGCTAAAATCCCACCACCGCAA ATTAATCTTCATGCCACAGCGGGGCCTCAAATGGCTGCGGCTTCAACTGCCCTGCAGATGGGTGCTGGTACCCCAACAGCATCTCAAGGTTTTGGCTTTA GAGGACCAGGAGTTCAAACGGCTGTGCCTCAAATGGTTGCTTCTTCTGGCCCACAGATGAGTGCTGTTGCCCCAACAGCGTCTCAAGGTTTTGGCTTTAG AGGACCAGGAGTTCAAACGGCTGTGCCTCAAATGGTTGCTTCATCTGCCCCACAGATGGGTGCTTTTGCTCCGACAGCGTTGCAAAGTCCTGGATTTAGA GGACCAGGAGTTCCAAATGCTAGTATGAACCCACAATACTTTCCACAGCAAAGTCAGACAATGAGACCACTTCAGGGTGTCCCTGCTGGAACTGCTTCCC GTCCACCTCAGGGTATGCTTTCCAGTAATCTTGGGGGTCCATCATCAGTAATGCCTACTGGAACTGCTTCTCGTCCACCTCAATTCATGTCTGGTGGTAC TGTTGGCTCCACTCCCAGTGTATCAAACCCGAACATCTCAAATGATTGGCTTGGTGGAAGGACTAGTGGAGCTCCACCTGGCCCTGGAGGTGTCCGGCCA TCTACATTGACCACTACTCAGCCACGACCTCTAAGCACGGTTTCCTCCCAGCCCACTGCTAATGATTCTAAAGTCCCGGTTGTTTCTGGAAATGGGTTTG CCTCTAATTTGTTTTTTGGTAGTGATGTATTTTCTGCAACCGCTGCTGCAACAAAACAGGAACCCTCTCTGCTGTCTGCTACTGGTGGTGCACAACCTCC GGTTAAGTCGGGCTCACTTGATTCACTGTTGAAAGCTGTTAGCACACCATCCTCATCTTCCAGTGTCCCAGTTTCTAGCGGCACCTGGGCCCAGGGCCCA GTTAAGTCCAGCTCACTTGATTCGCTTCAGAGTGCTTTTGCAATGCAACCTCTAGGCGGCCAGCCTCAGCGGACCCAATCATTACTGAGCTCCGGCCCAC ATGTTTCAGCTTCAAGTTCTGCCTCAATTGTGTCACCTGGCATTTCAGCTGGAGCTGGAAATTCTTCTGATAACTCACAGCTTTCATGGCCAAAGATGAA ACCAGCAGACATTCAAAATTATACTAAAGTTTTTATGGAAGTAGATACTGACAGAGATGGAAGAATCACTGGTGAGCAGGCACGGAATCTTTTTCTGAGC TGGAGGTTACCAAGAGAGATTTTAAAGCAGGTCTGGGATTTATCTGATCAAGATAGTGATAGCATGCTTTCTTTGAGGGAATTCTGCTTTGCCCTTTATT TGATGGAGAGGTACAGGGAAGGCCGTCCTCTTCCAGCAGCTCTTCCAAATAATGTTTTGTATGATGAGACCTTGTTGTCAATGACAGGTCAACCCAAAGT TGCTTATGGAAATGCTGCGTGGGGTCCCAGTCCTGGTTTTGCACAGCAGCTGGGGATGGGTGCCCGACCTATGGCTCCTATCCTTGGTATGAGGCCACCA GTTCCAGTAAATGCCCCCCAGCCTGATGCTGCAATGGCCAACAATCAGCAGATGTCAGGAGTGCCAGTCTTGGAGGATTCCTTTTTGAACCAACATGAAG GTGGAGAGCAGAATTCAGCAAACTCAATGACTCAAGATGGAACAGCCTCAGAGAAAAAGATTGATGAAGCAGAGAAGCTGATTTTGGACTTCAAGGAGAA GATTGAGTTTTACCGTTCTAAAATGCAGGATCTTGTTCTATATAAAAGCAGATGTGATAATAGGCTAAATGAAATCACAGAAAGGGCTTTGGCTGATACA CGAGAGGCAGAGTTGCTGGGTAAGAAATACGAAGAGAAGTACAAGCAAGTTGCAGAAGTGGCATCTAAATTAACAATTGAAGAGGCAACATTTCGTGACA TTCAGGAGAGAAAGCTGGAGTTGCATCAAGGAATAACTAACATGGAACAAGGTGGCAGTGCAGATGGTATTCTTCAGGTTCGTGCTGATCGTATACAATC AGACCTTGATGAGCTATTAAAGGCTTTAACTCAACGCTGCAAGAAACATGAACTCACTGTTAAGTCAACTGCAGTGATTGAGCTTCCTTTCGGCTGGCAA CCAGGAATTCAAGAGGATGCTGCTACTTGGGATGAAGATTGGGACAAGTTTGAAGATGAAGGGTTTTCCAACGAGCTCACTGTTGATGTGAAAAGTGCTC CTGGTCAAAAGGAGAGAGCATCTGTAGATGATAGTTTAACCCCTGATTCATTATCAAATGGTGATGGGAGGTCAGGGATTTTCACCGGCAAACATGTACT TGAGAGTGAAGCTGCTTATAACCACAGTGAAGATGAAATGGCAAGAAGCCCTCAAGGCAGTCCAGCTGGAAGGTCTGCGTCAGAAAGTCCATCTCAAGAC TTTTCTGATGTTTTTGCCAAGAGTACTGAAGCAGATATAGATACACATAGAAGTTTCGATGAATCAATTTGGGGTGCTTTTGACACAAATGATGATGTGG ACTCAGTCTGGGGATTTAACCCTACAGGCAACAAGGCATCGTCGGAGAATGAGGGAGGTTTCTTTGGATCTGATGATTTTGGTCTAAAGCCTATAAGAAC GGGATCCACATCCCCTGCAAATACTATTCAGAAAAATAGTATATTTTTTGAAGAATCTGTTGCAGGCTCCCCAATGTCAAGATTTAGCAACTCTCCAAGG TACAGTGAAGCAGGGGATCATTTTGACAATTACTTGAGATTTGATTCCTTTCCTTCAGCATGA
AA sequence Show only first row Show all	>Potri.005G253000.4 pacid=42804542 polypeptide=Potri.005G253000.4.p locus=Potri.005G253000 ID=Potri.005G253000.4.v4.1 annot-version=v4.1 MALPNMDVFEAYFKRADLDGDGRISGAEGFSFFQGSNLPKQVLAQIWMHADQSRSGFLGRPEFFNALRLVTVAQSKRDLTPDIVKAALYGLAAAKIPPPQ INLHATAGPQMAAASTALQMGAGTPTASQGFGFRGPGVQTAVPQMVASSGPQMSAVAPTASQGFGFRGPGVQTAVPQMVASSAPQMGAFAPTALQSPGFR GPGVPNASMNPQYFPQQSQTMRPLQGVPAGTASRPPQGMLSSNLGGPSSVMPTGTASRPPQFMSGGTVGSTPSVSNPNISNDWLGGRTSGAPPGPGGVRP STLTTTQPRPLSTVSSQPTANDSKVPVVSGNGFASNLFFGSDVFSATAAATKQEPSLLSATGGAQPPVKSGSLDSLLKAVSTPSSSSSVPVSSGTWAQGP VKSSSLDSLQSAFAMQPLGGQPQRTQSLLSSGPHVSASSSASIVSPGISAGAGNSSDNSQLSWPKMKPADIQNYTKVFMEVDTDRDGRITGEQARNLFLS WRLPREILKQVWDLSDQDSDSMLSLREFCFALYLMERYREGRPLPAALPNNVLYDETLLSMTGQPKVAYGNAAWGPSPGFAQQLGMGARPMAPILGMRPP VPVNAPQPDAAMANNQQMSGVPVLEDSFLNQHEGGEQNSANSMTQDGTASEKKIDEAEKLILDFKEKIEFYRSKMQDLVLYKSRCDNRLNEITERALADT REAELLGKKYEEKYKQVAEVASKLTIEEATFRDIQERKLELHQGITNMEQGGSADGILQVRADRIQSDLDELLKALTQRCKKHELTVKSTAVIELPFGWQ PGIQEDAATWDEDWDKFEDEGFSNELTVDVKSAPGQKERASVDDSLTPDSLSNGDGRSGIFTGKHVLESEAAYNHSEDEMARSPQGSPAGRSASESPSQD FSDVFAKSTEADIDTHRSFDESIWGAFDTNDDVDSVWGFNPTGNKASSENEGGFFGSDDFGLKPIRTGSTSPANTIQKNSIFFEESVAGSPMSRFSNSPR YSEAGDHFDNYLRFDSFPSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	0	1
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	1.00	0.7865
AT5G40740			unknown protein		Potri.001G337700 [exp]	1.41	0.7566
AT1G35220			unknown protein		Potri.002G100800 [exp]	3.87	0.7154
AT5G42140			Regulator of chromosome conden...		Potri.005G190000 [exp]	6.48	0.6856
AT3G60860			SEC7-like guanine nucleotide e...		Potri.002G149200 [exp]	11.31	0.6817
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.005G100200 [exp]	11.53	0.6762
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	12.32	0.7069
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	13.74	0.7065
AT5G24350			unknown protein		Potri.015G008500 [exp]	15.96	0.7386
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	17.88	0.6719

Compare expression of checked genes

Potri.005G253000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.