Plant FIBer expression Database

Potri.005G253200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43822 193 / 8e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030735
[exp]
226 / 1e-75 AT5G43822 198 / 1e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10013216
[exp]
200 / 2e-59 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15011 CK2S Casein Kinase 2 substrate
Representative CDS sequence
>Potri.005G253200.1 pacid=42803085 polypeptide=Potri.005G253200.1.p locus=Potri.005G253200 ID=Potri.005G253200.1.v4.1 annot-version=v4.1
ATGGAGGGATTGGTGAAGAAATATCAGCAAAGATTTAGAAAAGTGAGAGGATTAATGGAGGAATGGGAACAGCTTCAATCTCGATTAATCTCTCAATTTA
GTAACGCTTCTGCTATTATTGAGAGGTTAAAGGTGATTGGAGATTGTAATAATTATGGTAATTTGAAGAGTGTGGATGGAATTGTAGATGCAGTGGTGAG
AAAGCAGCTCGAGTCTTTGCAGACCATTTTGCTTTCCATGAATAAGACTTTGGAAGAGTTTCGCGGTGTGGTTTTGACAATTGAGAAGATGTATAGGGAT
GGTAGACAGTTAGTTAAAGGGGGTGGAGGTTCTAATCAGTTGAATGTGAAACAATTGCGGCAACGAATTGGGATTAAACCATGTCTCGCTGACTGTCTAG
ATGGGCTTATGATTCTTCATGAAATGCATCAGGCTGAATACCTGCTTAAATCATCAGTTGTTTCAGCACTTTCAGCGCTCACCTTGAAACCCAGTTCCAG
TGATCTTGGTGCGCTGCAACAACTCTTGATTGATCAGCCTAATATCCCCAAAGAGGAAGTACAAGTCATCTTTGAAATTATTTTTGCGGAAGAGATCTGT
TAA
AA sequence
>Potri.005G253200.1 pacid=42803085 polypeptide=Potri.005G253200.1.p locus=Potri.005G253200 ID=Potri.005G253200.1.v4.1 annot-version=v4.1
MEGLVKKYQQRFRKVRGLMEEWEQLQSRLISQFSNASAIIERLKVIGDCNNYGNLKSVDGIVDAVVRKQLESLQTILLSMNKTLEEFRGVVLTIEKMYRD
GRQLVKGGGGSNQLNVKQLRQRIGIKPCLADCLDGLMILHEMHQAEYLLKSSVVSALSALTLKPSSSDLGALQQLLIDQPNIPKEEVQVIFEIIFAEEIC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43822 Pentatricopeptide repeat (PPR)... Potri.005G253200
[exp]
0 1
AT2G02410 unknown protein Potri.003G046600
[exp]
6.24 0.7549
AT5G28770 bZIP BZO2H3, ATBZIP6... Arabidopsis thaliana basic leu... Potri.005G053200
[exp]
8.66 0.7415 Pt-BZO2.3
AT4G33060 Cyclophilin-like peptidyl-prol... Potri.018G061700
[exp]
9.79 0.7394
AT5G19460 ATNUDT20 nudix hydrolase homolog 20 (.1... Potri.006G157800
[exp]
9.89 0.7188
AT4G36960 RNA-binding (RRM/RBD/RNP motif... Potri.005G138600
[exp]
18.33 0.6702
AT3G52030 F-box family protein with WD40... Potri.009G056500
[exp]
19.23 0.6614
AT2G45150 CDS4 cytidinediphosphate diacylglyc... Potri.014G060100
[exp]
25.41 0.7094
AT1G49180 protein kinase family protein ... Potri.019G007200
[exp]
26.55 0.7161
AT1G77250 RING/FYVE/PHD-type zinc finger... Potri.005G183700
[exp]
27.83 0.6896
AT4G09900 ATMES12 ARABIDOPSIS THALIANA METHYL ES... Potri.013G104700
[exp]
30.72 0.6689

Potri.005G253200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.