Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 963 / 0 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 951 / 0 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 462 / 3e-148 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT5G42340 93 / 3e-19 PUB15 Plant U-Box 15 (.1) AT3G46510 86 / 4e-17 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 85 / 7e-17 PUB11 ARM repeat superfamily protein (.1) AT1G71020 81 / 7e-16 ARM repeat superfamily protein (.1.2) AT4G36550 72 / 9e-13 ARM repeat superfamily protein (.1) AT1G60190 72 / 1e-12 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 69 / 9e-12 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007800 [exp] 1429 / 0 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.008G112900 [exp] 512 / 1e-167 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 504 / 2e-164 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 234 / 1e-64 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 226 / 7e-62 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 206 / 3e-55 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 168 / 1e-42 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 164 / 2e-41 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 135 / 1e-32 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013216 [exp] 1276 / 0 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 998 / 0 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 479 / 1e-154 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10029113 [exp] 266 / 5e-77 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10040659 [exp] 253 / 4e-71 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 248 / 3e-69 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 247 / 5e-69 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10039402 [exp] 150 / 5e-37 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029112 [exp] 138 / 1e-36 AT1G68940 214 / 5e-64 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10034132 [exp] 137 / 4e-33 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.005G253400.1 pacid=42804693 polypeptide=Potri.005G253400.1.p locus=Potri.005G253400 ID=Potri.005G253400.1.v4.1 annot-version=v4.1 ATGGCTGAAAGCTGGGATGGAAGTTATGATCATGGTAGTCAATCGGATGAAAGTTATCAGTTTGAGAGACTCCATGTAGAGCCTATTTACGATGCATTTG TTTGCCCTTTAACAAAGCAAGTTATGAGTGATCCTGTCACCTTAGAAAATGGTCACACTTTTGAACGCGAAGCGATAGAGAAGTGGTTCAAGGAATGCAG GGAGAGTGGAAGGAAGTTGGTTTGCCCTTTGACACAAAAAGAATTGAGAAGCACAGAACTAAACCCCAGCATGGCTTTGCGGAACACCATTGAAGAGTGG ACTGCTAGGAATGAAGCTGTTCAACTTGATACGGCAAGGAGATCTCTAAACCCGGGCACTCCAGAGAGTGATGTTTTGCATTCTTTGAAGTATATACAAT ACATGTGTCATAAGAGCCGGTCAAATAAGCATGCTGTGCGCAATGCTGATTTAATACCTATGGTTGTTGAAATGTTGAAGAGTACCAGTCGTAGAGTCCG GTGCAAAGCTTTGGAAACGCTTCAGATTGTGGTCGAGGATGATGCTGATAATAAGGCAATACTGGCTGAGGGTGACAACGTGCGGACAATAGTTAAGTTT TTGTCTCATGAGCAATCCATAGAAAGGGAGGAAGCTGTCTCATTGTTGCTTGAGCTCTCAAAATCCGAAGCCTTGTGCGAGAAGATTGGTTCAGTCAATG GAGCAATTCTCATACTTGTTGGAATGATAAGCAGCAAATCAGAAAATCTTTCAACTGTTGAGAAAGCTGATAAAACACTGGGAAATCTGGAGAAATGTGA AAACAATGTACGGCAGATGGCTGAAAATGGCAGACTGCGACCTCTTCTGAATCAAATTCTTGAAGGCCCACCAGAAACTAAACTGTCTATGGCTTCATAC CTGGGTGAGCTGGTCATGAACAATGACGTGAAAGTCCTTGTTGCAAGAACTGTTGGTTCATCTTTAATCAATATTATGAGAAGTGGTGATATGCAGTCAA GAGAAGCTGCCTTAAAAGCTTTGAATCAAATTTCTTTTCACGAGGCAAGTGCCAAGGTTTTGATTGAGGCCGGAATTCTTCCTCCTCTTGTCAAAGACCT CTTCACAGTCGGCACCAATCAGCTTCCCATGCGTCTCAAAGAGGTCGCGGCAACAATTCTCGCCAATGTTGTAAACTCAGGCGATGACTTTGATCTGATT CCTGTTGGACCTGACCATCACTCTCTTGTTTCAGAAGACATGGTGCATAACCTCCTCCATCTAATTAGCAACACTGGTCCAGCTATTGAGTGCAAACTTT TGCAGGTTCTTGTTGGGCTGACTAGTTCTTCATCTACTGTTTTAAATGTTGTTGCTGCCATTAAAAGCTCAGGAGCTATCAACAGTTTGGTTCAGTTTAT TGAGGCTCCCCAGAGGGATTTGCGTGTAGCTTCCATAAAACTTCTCCAGAAAGTCTCTCCACATATGGGCCAGGAATTAGCTGATGCTCTCTGTGGCGTG GTGGGCCAGCTAGGAAGCCTTTTCAAAGTTGTAGCAGAAAACATAGGAATCACAGAAGAGCAGGCAGCTGCTATTGGCCTTTTAGCTGAGCTCCCAGAGA GGGATCTGGGCCTCACTCGGCAGATGCTAGATGAAAGCTCCTTTCCACTAATCATCTCCAGAGTGGTAAAGATCCAACAGGGTGAGATTAGGAGTGCCCG CTTTATGACACCATTTTTTGAAGGACTAGTACGGGTTCTATCAAGGGTCACATTTGTGTTGGCTGATGAACCAGATGCCATTAAGCTCGCCCGTGAGCAC AATCTCGCAGCTCTTTTCATCCAACTGCTTCAGTCCAACGGACTCGACAATGTACAGATGGTCTCTGCCATGGCATTAGAGAACTTGGCTCAAGAGTCCA AAAATTTAACAAGATTGCCTGAGTTGCCGCCTCCTAATTTATGTGCCTCAATCTTTTCGTGTTTTAGCAAACAGCCTGTCATAAGTGGATCGTGCCGGCT CCACGGAGGAACATGTTCCCTAAAAGAAACATTCTGTCTTCTGGAAGGACAGGCTGTTGAGAAGCTGGTAGCTCTTTTAGATCACACAAATGAGAAAGTG GTTGAGGCAGCACTTGCAGCAATCTCTACTTTGTTGGATGATGGGGTTGACATTGAACAAGGGGTGGCGGTGCTGTGTGAGGCAGAGGGAGTTAGACCTA TACTTGATGTTTTGCTGGAGAAACGGACAGAGAATCTGAGAAGGAGGGCAGTTTGGGCTGCTGAGAGACTTTTACGAACTGATGACATAGCATATGACGT TTCTGGAGATCCAAACGTGAGTACTGCACTTGTTGATGCCTTCCAGCATGCTGACTATCGGACACGGCAGATTGCTGAGCGTGCCCTGAAACATGTCGAT AAGATACCCAACTTCTCTGGCATCTATCCAAATACAGGTCAGACCGCTTTCTGA
AA sequence Show only first row Show all	>Potri.005G253400.1 pacid=42804693 polypeptide=Potri.005G253400.1.p locus=Potri.005G253400 ID=Potri.005G253400.1.v4.1 annot-version=v4.1 MAESWDGSYDHGSQSDESYQFERLHVEPIYDAFVCPLTKQVMSDPVTLENGHTFEREAIEKWFKECRESGRKLVCPLTQKELRSTELNPSMALRNTIEEW TARNEAVQLDTARRSLNPGTPESDVLHSLKYIQYMCHKSRSNKHAVRNADLIPMVVEMLKSTSRRVRCKALETLQIVVEDDADNKAILAEGDNVRTIVKF LSHEQSIEREEAVSLLLELSKSEALCEKIGSVNGAILILVGMISSKSENLSTVEKADKTLGNLEKCENNVRQMAENGRLRPLLNQILEGPPETKLSMASY LGELVMNNDVKVLVARTVGSSLINIMRSGDMQSREAALKALNQISFHEASAKVLIEAGILPPLVKDLFTVGTNQLPMRLKEVAATILANVVNSGDDFDLI PVGPDHHSLVSEDMVHNLLHLISNTGPAIECKLLQVLVGLTSSSSTVLNVVAAIKSSGAINSLVQFIEAPQRDLRVASIKLLQKVSPHMGQELADALCGV VGQLGSLFKVVAENIGITEEQAAAIGLLAELPERDLGLTRQMLDESSFPLIISRVVKIQQGEIRSARFMTPFFEGLVRVLSRVTFVLADEPDAIKLAREH NLAALFIQLLQSNGLDNVQMVSAMALENLAQESKNLTRLPELPPPNLCASIFSCFSKQPVISGSCRLHGGTCSLKETFCLLEGQAVEKLVALLDHTNEKV VEAALAAISTLLDDGVDIEQGVAVLCEAEGVRPILDVLLEKRTENLRRRAVWAAERLLRTDDIAYDVSGDPNVSTALVDAFQHADYRTRQIAERALKHVD KIPNFSGIYPNTGQTAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	1.73	0.7733
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	2.00	0.7447
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.003G135300 [exp]	4.69	0.6981
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	6.24	0.7467
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	7.48	0.7257	ATFYPP3.2
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	11.40	0.6839	RAB11.15
AT3G02420			unknown protein		Potri.017G110600 [exp]	12.00	0.7189
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	12.84	0.6225	CDPK1.3
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	13.41	0.6465
AT2G23310		ATRER1C1, ATRER...	Rer1 family protein (.1.2)		Potri.005G141700 [exp]	14.35	0.7670

Compare expression of checked genes

Potri.005G253400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.