Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42360 687 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42350 681 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 59 / 4e-09 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G30090 59 / 4e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 56 / 5e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 55 / 1e-07 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G24540 53 / 3e-07 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 53 / 3e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 52 / 9e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 49 / 9e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007700 [exp] 1050 / 0 AT5G42350 718 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 73 / 2e-13 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 57 / 1e-08 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.004G112400 [exp] 57 / 2e-08 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 56 / 3e-08 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 54 / 2e-07 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 53 / 3e-07 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 52 / 7e-07 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 51 / 1e-06 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013215 [exp] 790 / 0 AT5G42350 647 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030733 [exp] 492 / 7e-170 AT5G42360 388 / 1e-129 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 71 / 7e-13 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 71 / 8e-13 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 58 / 1e-08 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 57 / 2e-08 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10035147 [exp] 56 / 8e-08 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 54 / 2e-07 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 53 / 5e-07 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007855 [exp] 52 / 1e-06 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.005G253500.2 pacid=42804939 polypeptide=Potri.005G253500.2.p locus=Potri.005G253500 ID=Potri.005G253500.2.v4.1 annot-version=v4.1 ATGTTTTCCGAGAGATTAACGGGAGAGGCATCTCTTCGCCGGGAATTGGAGGCTTTGAGTGTGTCTCAACGGCTAGTTAGAAGTGTTAGCCAGAAGTTGA GGAAGAGGAATCATAGAGGTGAAGGAGAGGAAGAGGATGATTCAAGGGGAGTTTCGCTGAAATGTCTTACTTTGTATGGTATGGGTGGGGGTTGCAAAGT TGGTGCTGACACAGGTGAGGAATTTGGGGATCCGAGCGGTAGGAGGAGGTCATCAAGTGCTAGTGAAGAAGGAAAGGGATATAGACCGATATGTGGTAAT GAGGAGACAGGGTTCGATTGTTTCTCATATGGGATGAGGGAGAAGTTTTGGAAGAAAAACAGTAGAAAGGATTTAGAGCTTGAAGATTTAATTCAAAATA GCAGGTTGCATATGTTTCTTCCAGATGACGTACTGGAATTATGCTTGGTGAGACTCCCATTGACCAGTCTGATGAATGCCCGCCTTGTATGCAAGAAGTG GAGATACTTGACTACCACCCCTCGGTTCCTGCAGATGAGACGGGAAGGTCCATATCTGAATCCGTGGTTGTTTTTGTTTGGCGCTGTTAAAGATGGATAT TGTTCTGGGGATATATATGCATTGGATGTATATCAGGACCAGTGGCATAGGATTGATTCTGACATTCTAAAAGGAAGGTTCATGTTTTCTGTTGCCAGTT TTCAAGATGATATTTATGTTGTTGGTGGTTGTTCTAGCTTGACTCACTTTGGGAGAGTGGATAGGAGCTCATTCAGGACACACAAAGGGGTGTGGGCTTT TAGCCCTTTAACTAAATCTTGGCGTAAAATTGCTTCCATGAGGTATGCTAGATCAATGCCTGTTTTAGGAATTTCTGAGGTTCGTTCAGACTTTTCAGTG GTTCACAGTCATCAACATCGACAAGAAAGACGTTTTCCTAGGTCACGTATTGCTGGGGTATCAGATGTTTATGAGGACCCTCACAGGTTTTCACTAAGAA GACAATATAGAAATGCTTTTGATGAATATGAGCCTTCATCATTGCCCAATAGAAAGTCACACAAGTTCACCAGACAAAAAAGTGGCCAATCAAATATGAA GGACTGCAAGAGGTTTGTATTGATTGCTGTAGGGGGTCTTGGATCCTGGGACGAGCCACTAGATTCTGGAGAAATTTATGATCCCATAGCAAATAAATGG ACAGAAATCCAGAGGTTGCCTATGGATTTTGGGGTTGTTTGTTCTGGAGTTATTTGCAATGGGATGTTTTATGTTTACTCTGAGACAGACAAGCTCATGG GATATGACATTGAAAGGGGCTTCTGGATGGCAATCCAATCCTCTCCATTCCCTCCTCGTGTTCAAGAGTATTACCCTAAACTTGTATCTTGTAATGGCCA GCTATTTATGCTTTCAGTCTCCTGGTGTGAAGGGGATGGTCAAATCGGCCAGAGAAACAAGGCTGTTAGAAAATTGTGGGAGCTAGATCTCATGTATCTT AACTGGACTGAAGTTTCAGTACATCCCGATGCTCCAATGGATTGGAATGCTGCATTTGTTGCAGATAAAAACCTAATATTTGGGGTTGAAATGTTCAAAA TATTTGGTCAAGTGTTGGACTTCTTGACCGTATGTGATGTGTCTGACACGGGGACAAACTGGAGTCACATTGCTAGGAATCACATGACTCATGAATTTGA CGCTTCCTCGTGCATGACTAAATCATTGGCTGTCTTGTATCTTTGA
AA sequence Show only first row Show all	>Potri.005G253500.2 pacid=42804939 polypeptide=Potri.005G253500.2.p locus=Potri.005G253500 ID=Potri.005G253500.2.v4.1 annot-version=v4.1 MFSERLTGEASLRRELEALSVSQRLVRSVSQKLRKRNHRGEGEEEDDSRGVSLKCLTLYGMGGGCKVGADTGEEFGDPSGRRRSSSASEEGKGYRPICGN EETGFDCFSYGMREKFWKKNSRKDLELEDLIQNSRLHMFLPDDVLELCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGPYLNPWLFLFGAVKDGY CSGDIYALDVYQDQWHRIDSDILKGRFMFSVASFQDDIYVVGGCSSLTHFGRVDRSSFRTHKGVWAFSPLTKSWRKIASMRYARSMPVLGISEVRSDFSV VHSHQHRQERRFPRSRIAGVSDVYEDPHRFSLRRQYRNAFDEYEPSSLPNRKSHKFTRQKSGQSNMKDCKRFVLIAVGGLGSWDEPLDSGEIYDPIANKW TEIQRLPMDFGVVCSGVICNGMFYVYSETDKLMGYDIERGFWMAIQSSPFPPRVQEYYPKLVSCNGQLFMLSVSWCEGDGQIGQRNKAVRKLWELDLMYL NWTEVSVHPDAPMDWNAAFVADKNLIFGVEMFKIFGQVLDFLTVCDVSDTGTNWSHIARNHMTHEFDASSCMTKSLAVLYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42360			Galactose oxidase/kelch repeat...		Potri.005G253500 [exp]	0	1
AT1G18190		GC2	golgin candidate 2 (.1)		Potri.015G039800 [exp]	1.41	0.8765
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	5.83	0.8707
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.006G230800 [exp]	6.00	0.8144
AT1G70750			Protein of unknown function, D...		Potri.008G132200 [exp]	8.94	0.7889
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	13.96	0.8330
AT1G55535			unknown protein		Potri.001G001400 [exp]	16.09	0.7671
AT5G17910			unknown protein		Potri.013G068800 [exp]	16.88	0.8170
AT1G55270			Galactose oxidase/kelch repeat...		Potri.003G217700 [exp]	17.23	0.6793
AT1G75590			SAUR-like auxin-responsive pro...		Potri.002G024500 [exp]	18.97	0.8206
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Potri.006G252100 [exp]	20.49	0.7985

Compare expression of checked genes

Potri.005G253500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.