Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33700 585 / 0 Protein phosphatase 2C family protein (.1) AT3G51470 464 / 5e-164 Protein phosphatase 2C family protein (.1) AT2G25620 347 / 8e-118 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 315 / 5e-105 Protein phosphatase 2C family protein (.1.2) AT1G48040 291 / 8e-96 Protein phosphatase 2C family protein (.1) AT3G17250 292 / 1e-95 Protein phosphatase 2C family protein (.1) AT5G10740 153 / 6e-43 Protein phosphatase 2C family protein (.1) AT1G43900 152 / 2e-42 Protein phosphatase 2C family protein (.1) AT5G24940 153 / 3e-42 Protein phosphatase 2C family protein (.1) AT4G31750 149 / 9e-42 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007500 [exp] 649 / 0 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 509 / 0 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 503 / 4e-179 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 344 / 3e-116 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.006G248400 [exp] 341 / 2e-115 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 340 / 4e-115 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 333 / 4e-112 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 324 / 7e-109 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.002G190400 [exp] 297 / 3e-98 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030731 [exp] 574 / 0 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 574 / 0 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 572 / 0 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 561 / 0 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 341 / 2e-115 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 336 / 2e-113 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10037832 [exp] 311 / 1e-103 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10001682 [exp] 310 / 4e-103 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10017106 [exp] 309 / 6e-103 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10038058 [exp] 306 / 1e-101 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.005G253700.1 pacid=42804845 polypeptide=Potri.005G253700.1.p locus=Potri.005G253700 ID=Potri.005G253700.1.v4.1 annot-version=v4.1 ATGGCAGCAGGCATGGATTTTTCGCCACCATTTACGGTACTAGAAGGCGGTTACAACAAAGACAACAACAACAGCAGCACTAATGTATCGGAAAATCAAA ACGCTGAGAATTTAGACAACCTTAAACAATCCACCAATGGGAAACCTCCACGACATCTCCGTCAAAGTATGGACTCCACCCGATTGCTCAACGCCGCTGA TCTGGCGCTTGATGTTGGGGTTGTGGTCGTGGTTAGTAACTCACCGGCTGATGAAAGAACGGATTTTTTACCGTTGTTTCGATCGGGAAGTTGTGCTGAA GGAGGGCCTAAACAGTATATGGAAGATGAACATGTTTGTATAGATAATCTTGTTGATCATCTAGATGCCACCGCCAACTGCCCTTCTCCGGGAGCTTTTT ATGGGGTGTTTGATGGGCATGGAGGAACAGATGCGGCATTGTTTGTGAAAAATAATATTCTGAGGTTTATAGTCGAGGACTCCCATTTTCCGATTTGTGT GGAGAAGGCTATTAAGAGTGCTTTTGTGAAAGCTGATTATGCATTTGCAGATGATAGTGCACTTGATATCTCTTCTGGCACCACCGCACTAATTGCTCTT ATATTTGGAAGGACATTAATAGTTGCCAATGCTGGAGATTGTCGAGCTGTGCTGGGGAGGCGAGGTAGAGCAATTGAGATGTCCAAAGACCACAAACCTA ACTGCACATCAGAGAGACTAAGAATTGAGAAACTTGGTGGCGTCATTTATGATGACTACCTCAATGGCCAATTATCTGTTGCACGTGCCCTCGGAGACTG GCACATGAAGGGCCCTAAAGGTTCGGCCTGCCCTTTAAGTGCTGAGCCTGAATTGCGAGAGACAAATTTGACTGAGGAAGATGAGTTCTTGATCATGGGC TGTGATGGCCTGTGGGATGTAATGAGCAGCCAGTGTGCTGTGACAATTTCTAGGAAAGAACTGATGCTCCATAATGATCCTGAAAGATGCTCAAGAGAGC TGGTCAGGGAGGCACTCAGACGCAATGCATGTGATAATCTAACAGTAATTGTTATCTGTTTCTCCCCGGATCCACCCCCCAGGATAGAAATCCCACAATC CCGAGTTCGGAGGAGCATATCAGCTGAAGGTTTGAACTTACTAAAGGGTGTTCTGGATAGTAACTCATGA
AA sequence Show only first row Show all	>Potri.005G253700.1 pacid=42804845 polypeptide=Potri.005G253700.1.p locus=Potri.005G253700 ID=Potri.005G253700.1.v4.1 annot-version=v4.1 MAAGMDFSPPFTVLEGGYNKDNNNSSTNVSENQNAENLDNLKQSTNGKPPRHLRQSMDSTRLLNAADLALDVGVVVVVSNSPADERTDFLPLFRSGSCAE GGPKQYMEDEHVCIDNLVDHLDATANCPSPGAFYGVFDGHGGTDAALFVKNNILRFIVEDSHFPICVEKAIKSAFVKADYAFADDSALDISSGTTALIAL IFGRTLIVANAGDCRAVLGRRGRAIEMSKDHKPNCTSERLRIEKLGGVIYDDYLNGQLSVARALGDWHMKGPKGSACPLSAEPELRETNLTEEDEFLIMG CDGLWDVMSSQCAVTISRKELMLHNDPERCSRELVREALRRNACDNLTVIVICFSPDPPPRIEIPQSRVRRSISAEGLNLLKGVLDSNS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33700			Protein phosphatase 2C family ...		Potri.005G253700 [exp]	0	1
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	4.58	0.7076
AT2G17030			F-box family protein with a do...		Potri.004G179685 [exp]	5.29	0.6942
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Potri.002G110900 [exp]	11.13	0.6552	ZIM.2
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	15.87	0.6600
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	24.26	0.5831
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.012G127300 [exp]	39.94	0.5523
AT5G07120		SNX2b	sorting nexin 2B (.1)		Potri.019G124200 [exp]	42.90	0.6299
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.006G085600 [exp]	49.29	0.5953	MYB211,Pt-MYB3.1
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	53.06	0.5890
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	75.48	0.5350

Compare expression of checked genes

Potri.005G253700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.