Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56590 191 / 8e-56 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 188 / 4e-55 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 186 / 1e-54 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 183 / 2e-53 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 184 / 3e-53 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 177 / 1e-50 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 176 / 2e-50 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 169 / 2e-47 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 168 / 2e-47 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 164 / 5e-46 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007300 [exp] 561 / 0 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 199 / 4e-59 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 194 / 2e-57 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 189 / 9e-56 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 183 / 2e-53 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G055900 [exp] 181 / 1e-52 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 181 / 4e-52 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 177 / 5e-51 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 177 / 8e-51 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016032 [exp] 406 / 9e-140 AT5G24318 333 / 3e-110 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10012937 [exp] 194 / 1e-57 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034987 [exp] 184 / 3e-54 AT5G56590 562 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 186 / 4e-54 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 185 / 6e-54 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 184 / 1e-53 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 184 / 3e-53 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 180 / 4e-52 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10018306 [exp] 179 / 8e-52 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 179 / 1e-51 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.005G253900.2 pacid=42804643 polypeptide=Potri.005G253900.2.p locus=Potri.005G253900 ID=Potri.005G253900.2.v4.1 annot-version=v4.1 ATGGCTACTGCCTCTGTCCTTGCCCTTCTCCTCCTTGCAATTCTCAGCCCACTTCAAAACGTTTCTGCTGTTGGTGTTAGCTACGGCACTCTTGGAAACA ACTTCCCATCACCGAAAAAGGCATTTTCCAACACCAGAATTGACCTCATCATAGCAGTCGAAAACTACCACGTGGCAAATATCAGCACTGATACGTCAGC TGCCGATGAATGGTTCACCGATCGTGTGATGTCCTTTATTCCTTATCTAACAACAGATCCTGATCACCTGAAGCGAAATGCACTTGTCCAAGCAATGCAA AACTTGCATGTTTTATTTCAACGTGCACACATTCATAGTATGGCAGTTCTTGCTTCTTCATTCCCTCCTTCAGTTTCAACTTTTGCCACTACACTCATGC CTGTTATGACCTCAATTGTAGGCTTTTTGGCTGACACGGTATGCCTTGCTAGGGGATGCTACCGGGTCCACGACCCTAAAGGATATGTGTACAACAATAT GTTAGATGCACAAGTTGATGCTATTGGATCAGCTATTGTTGCATTAGGGTCTGGAAATCGTACGGTTAAGATCACCATATCAGAATCCGGGTGGCCATCA AAGGGTGAATCAGGTGAGACAGCTGCCACACCTGATAATGCAAAGACTCATAATACTAGGTTGGTTGAACGTGCACAGTCTAGTAAAGGGACACCAATGA GTCCCAAGGAAAATATACAGAAATTTGTGTTTGCATTGTTTAATGAGAATAAAAAAGAGGGAGGGTTGTATGTTGTGGATTTGAGCTGCCAGTTTTGTAG TAGCAATGGAGGGACATCAGGGTTTGGTGAGAAAATGTCGAGTGGAGTAAGTGGTCCTTCAGTTCGGTGTGTAGCTAAACCTCATGCTGATGAGAAAGTG CTTCAAGCTGTGCTGGATTTGTTCTGTGGACCAGGTGGCGTGGATTGCAGAGAGATTTATGTAAGTGGTGACTGTTTTGCACCTGATAAGCTTCATGCAC ATGCATCATATGCCATGAATGCTTATTACCAAATGCATGGGAGAAACCACTGGAATTGTGACTTCAAGGGCACTGGACTTGTTACTTTCAGTGATCGAAG CTACAAGTTCTTTGTTACGGGATGCCGGTATTCACAGCAATGA
AA sequence Show only first row Show all	>Potri.005G253900.2 pacid=42804643 polypeptide=Potri.005G253900.2.p locus=Potri.005G253900 ID=Potri.005G253900.2.v4.1 annot-version=v4.1 MATASVLALLLLAILSPLQNVSAVGVSYGTLGNNFPSPKKAFSNTRIDLIIAVENYHVANISTDTSAADEWFTDRVMSFIPYLTTDPDHLKRNALVQAMQ NLHVLFQRAHIHSMAVLASSFPPSVSTFATTLMPVMTSIVGFLADTVCLARGCYRVHDPKGYVYNNMLDAQVDAIGSAIVALGSGNRTVKITISESGWPS KGESGETAATPDNAKTHNTRLVERAQSSKGTPMSPKENIQKFVFALFNENKKEGGLYVVDLSCQFCSSNGGTSGFGEKMSSGVSGPSVRCVAKPHADEKV LQAVLDLFCGPGGVDCREIYVSGDCFAPDKLHAHASYAMNAYYQMHGRNHWNCDFKGTGLVTFSDRSYKFFVTGCRYSQQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.005G253900 [exp]	0	1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	3.00	0.9221	CYP51.2
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	4.47	0.9070
AT4G35930			F-box family protein (.1)		Potri.005G110200 [exp]	6.24	0.9129
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	8.60	0.9144	Pt-ACT2.4
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	9.16	0.9118
AT1G67180			zinc finger (C3HC4-type RING f...		Potri.004G106000 [exp]	11.83	0.8843
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	13.63	0.9021
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	19.39	0.8994	Pt-CLF.1
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	20.00	0.8947
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	21.07	0.8711

Compare expression of checked genes

Potri.005G253900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.