Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24360 722 / 0 AtIRE1b, ATIRE1-1 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) AT2G17520 616 / 0 ATIRE1-2, IRE1A ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) AT3G11870 301 / 6e-92 Endoribonuclease/protein kinase IRE1-like (.1) AT2G05060 93 / 3e-20 Protein kinase superfamily protein (.1) AT5G27790 85 / 2e-17 Protein kinase superfamily protein (.1) AT3G59410 86 / 7e-17 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT1G54960 83 / 4e-16 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G02970 82 / 6e-16 ATWEE1, WEE1 WEE1 kinase homolog (.1) AT2G34290 79 / 7e-16 Protein kinase superfamily protein (.1) AT1G09000 82 / 9e-16 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059000 [exp] 659 / 0 AT2G17520 673 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Potri.002G007201 [exp] 294 / 2e-94 AT5G24360 199 / 6e-60 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.002G007150 [exp] 236 / 3e-73 AT5G24360 56 / 1e-09 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.010G247400 [exp] 92 / 3e-19 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.007G112400 [exp] 85 / 5e-17 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.006G279900 [exp] 84 / 6e-17 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.005G033400 [exp] 85 / 9e-17 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.017G048400 [exp] 83 / 2e-16 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.002G129100 [exp] 84 / 3e-16 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030730 [exp] 1153 / 0 AT5G24360 706 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10013212 [exp] 1142 / 0 AT5G24360 701 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10035979 [exp] 716 / 0 AT2G17520 618 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Lus10034860 [exp] 87 / 2e-17 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10033400 [exp] 84 / 2e-16 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10036464 [exp] 83 / 2e-16 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10041132 [exp] 81 / 2e-15 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10030589 [exp] 81 / 3e-15 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 80 / 6e-15 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10005135 [exp] 80 / 6e-15 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06479 [poplar] [flax] Ribonuc_2-5A Ribonuclease 2-5A CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G254000.2 pacid=42804713 polypeptide=Potri.005G254000.2.p locus=Potri.005G254000 ID=Potri.005G254000.2.v4.1 annot-version=v4.1 ATGAAGCGCTCTTTGATATTTCTTCTACTGATACTTCTGATCTTGTCACCGCTGATCTCTCAATTTTGCCTCTCTGATCAGAGTAATCAGATCACCAAAC TATTCGATCCTCTGCTGCCGCCAACACCTAGGCAACAAGATGTAGCGATTGTGGCTGCTTTGGATGGGACAGTGCATTTGGTGGATACTAATTTAAGGAA AACTCGATGGTCTTTTCCGACGGGATCGCCTATTTATTCTTCTTATCAAGCTAGAGTTAGCAGTGATGATGATAGGCATAATGGTTCTGAGCTTAGTAAG GACTTGTATTATATTGATTGTGGAGATGATTGGGAACTTTATGTGCATAGCCAGCGCTTTGGAAAATTGCGAAAACTCTCACTGAGTGCTGATGAATATA TTAGAATGACGCCACATATATCTGATGATGGAGAAATTACGTTGGGGTTGAAAAAAACTACTGCTTTTCTTGTTGATGCTAAGACTGGAAGGGTTGTTCG CACATATAAGTTTGATAATTCTGCTTCGAAAGTAGGGGTTCAAGTTTTTGAAGGGAATGCTGTTATGTTGTCGAAAGATGCTGGAGAATTGGTAGAATCT GGTGATGTTGATCTGGGAGCATTTAAGCATCTGGTTTACATCACAAGGACAGATTATGTGCTGCAACACTATTCTCCAAACTCTTCTGAGATATTATGGA ATGTGGCATTTGCAGATATTGAGGGTGAATTCCGGTGTCAGGGGATTCAGAGTTCTTTTGATGGGGTGCCTCCGAATGCCAATGAGGACACAGATGAGAC TGAATGGCAATTGCCTTGTCAGAAGAAGACAGTTGCCCTCCGAATTCGTGACCACGGCATGTTTGAATTTGATAAACTAGCAATTACTCATCTAGGAGGT GGAGCTAACTTTCTTCCTGTTCCATATAACAAACCTCCTTTTGGACATGTTCCTAGATTTCAGCCGGCTCTTCCCACCAGTGGAGACATACCTGTGCTTG CATTGCCCTCATCTGAGGGGAAAAACCCTGGGATATTGGCTCCTTTTAGTGGAAACAGTGGCACAGTGAATGCTATAACCCCATCTTCTGAAAATATAGC AAAGTCTCATGTATGGCCTTTTATTACAGCTGTTTTGTCAATTATGGGGTTCATCTTTTACAAATTTTTAGCATCCAGAAAACAGGGCAAGTTGAATAAA CCTATTGAGGAACTTCAACCCCGATCTGGGATGCCAAAAAAGAAGAAAAATCGGAGATCAGGAAACAACAAGAGTAATCCCAATAATCTGAAAAATCAGA AATATTTGTCTCTTCAGAGTAAGGTTGGAGAAATCAATGAACTTACACGTGTTGAAAGAGATGAAAGGAAATTGTTATTGACTTTTACTGATCATGTTGA TGGTCGAGTAGATGGTCGTAGAATTGGCAAGTTGTTAGTTTCCAACAAAGAAATTGCTAAGGGTAGTAATGGTACAGTTGTGCTTGAGGGAATTTATGAT GGGCGTCATGTGGCTGTGAAGCGCCTGGTGCAATCTCATCATGATGTGGCTTTGAAAGAGATTCAGAACCTTATTGCCTCTGATCAACATCCAAATATTG TTAGATGGTACGGGGTGGAGTATGATCAAGATTTTGTTTATCTTGCGTTGGAGCGCTGCACCTGCAGCTTAAATGACTTAATTTATGTTAATTCTGAATC TTTCCAAAATCAAATACCATCCAAGGATATGGACTCCAACCGCTTGCCTGAGTACATGGTTCGATTGCATTCAATGCCGGAACATAACAGAAATGTTGAA TTGTGGAAGGCCAACGGTTATCCTTCAGTACAGTTGTTAAAATTAATGAGGGATGTGGTTTCTGGGCTTGCCCATTTGCATGAACTTGGAATTGTACATC GGGACATGAAGCCTCAGAATGTTTTGATTATCAGCGAGAAATCTTTCTGTGCAAAGCTTTCAGATATGGGCATTAGCAAGCGCCTACTTGGGGACATGTC TTCCTTGACCCAGCATCCAACTGGTTATGGGAGCTCAGGCTGGCAAGCACCTGAACAACTACTTCATGGACGCCAAACACGTGCATTAGACTTGTTTAGT TTAGGCTGTGTTCTATTTTTTTGTATCACAGGGGGTAAGCATCCTTTTGGCGATAATATTGAACGTGATGTCAATATTGTCAATGACCGTAAGGACCTAT TCTTAGTAGAGAATATACCAGAAGCTCTGGATCTTTTCACTTGTCTCTTGGATCCCGACCCAGAGAAGAGGCCAAAAGCCCAGGAAGTGTTGAATCATCC CCTGTTTTGGACTTCTGAGAAAAGGCTCTCATTTCTCCAGGATGTTAGTGATCGAGTGGAACTGGAAGATAGGGAGAATGCATCGGAACTCTTGGATACA TTAGAAAGCACTGCAACAATGGCATTGAATGGGAAATGGGATGAAAAGATGGAAGCTGCATTTATTAACAACATTGGCCGCTACAGGCGTTATAAGTTTG ACTCCATTCGTGACCTATTACGGGTCATACGCAACAAGTCACATCACTATAGGGAACTCCCCCAGGAGATTAAGGAATTATTAGGGTCACATCCAGAAGG ATTTGAGAGTTATTTTTCACGTCGATTTCCAAAACTCTTGATTGAAGTTTACAAAGTGATCTACAGGTACTGCAAAGAGGAGGAGTTTTTCCGTAAATAC ATAGACAGCAATATAATCTAG
AA sequence Show only first row Show all	>Potri.005G254000.2 pacid=42804713 polypeptide=Potri.005G254000.2.p locus=Potri.005G254000 ID=Potri.005G254000.2.v4.1 annot-version=v4.1 MKRSLIFLLLILLILSPLISQFCLSDQSNQITKLFDPLLPPTPRQQDVAIVAALDGTVHLVDTNLRKTRWSFPTGSPIYSSYQARVSSDDDRHNGSELSK DLYYIDCGDDWELYVHSQRFGKLRKLSLSADEYIRMTPHISDDGEITLGLKKTTAFLVDAKTGRVVRTYKFDNSASKVGVQVFEGNAVMLSKDAGELVES GDVDLGAFKHLVYITRTDYVLQHYSPNSSEILWNVAFADIEGEFRCQGIQSSFDGVPPNANEDTDETEWQLPCQKKTVALRIRDHGMFEFDKLAITHLGG GANFLPVPYNKPPFGHVPRFQPALPTSGDIPVLALPSSEGKNPGILAPFSGNSGTVNAITPSSENIAKSHVWPFITAVLSIMGFIFYKFLASRKQGKLNK PIEELQPRSGMPKKKKNRRSGNNKSNPNNLKNQKYLSLQSKVGEINELTRVERDERKLLLTFTDHVDGRVDGRRIGKLLVSNKEIAKGSNGTVVLEGIYD GRHVAVKRLVQSHHDVALKEIQNLIASDQHPNIVRWYGVEYDQDFVYLALERCTCSLNDLIYVNSESFQNQIPSKDMDSNRLPEYMVRLHSMPEHNRNVE LWKANGYPSVQLLKLMRDVVSGLAHLHELGIVHRDMKPQNVLIISEKSFCAKLSDMGISKRLLGDMSSLTQHPTGYGSSGWQAPEQLLHGRQTRALDLFS LGCVLFFCITGGKHPFGDNIERDVNIVNDRKDLFLVENIPEALDLFTCLLDPDPEKRPKAQEVLNHPLFWTSEKRLSFLQDVSDRVELEDRENASELLDT LESTATMALNGKWDEKMEAAFINNIGRYRRYKFDSIRDLLRVIRNKSHHYRELPQEIKELLGSHPEGFESYFSRRFPKLLIEVYKVIYRYCKEEEFFRKY IDSNII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	0	1
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.004G176000 [exp]	5.83	0.7082
AT5G12230		MED19A	unknown protein		Potri.009G156200 [exp]	8.12	0.7015
AT3G58050			unknown protein		Potri.016G060200 [exp]	10.24	0.7075
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	10.48	0.7016
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	12.48	0.6773
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.005G047600 [exp]	12.68	0.6978	Pt-EDR1.1
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.008G152600 [exp]	15.39	0.7183
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	18.11	0.7058
AT1G61690			phosphoinositide binding (.1)		Potri.011G032200 [exp]	24.73	0.5901
AT1G80610			unknown protein		Potri.017G053900 [exp]	30.51	0.6275

Compare expression of checked genes

Potri.005G254000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.