Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAPB.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42970 733 / 0 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G12900 512 / 0 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 501 / 4e-177 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) AT1G79530 289 / 1e-93 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 283 / 3e-91 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT3G04120 258 / 1e-82 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) AT1G13440 256 / 8e-82 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007100 [exp] 766 / 0 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G220566 [exp] 471 / 2e-165 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.014G140500 [exp] 468 / 7e-164 AT3G26650 622 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.010G172400 [exp] 276 / 1e-88 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.008G083900 [exp] 273 / 1e-87 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.012G094100 [exp] 265 / 3e-85 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.015G091400 [exp] 259 / 4e-83 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.001G335800 [exp] 258 / 1e-82 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.010G055400 [exp] 252 / 2e-80 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012243 [exp] 711 / 0 AT1G42970 759 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10016033 [exp] 711 / 0 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10012591 [exp] 484 / 1e-169 AT1G12900 654 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10041502 [exp] 483 / 1e-169 AT1G12900 650 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10009602 [exp] 280 / 4e-90 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 279 / 1e-89 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10011375 [exp] 264 / 8e-85 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10006435 [exp] 264 / 8e-85 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10022332 [exp] 263 / 1e-84 AT1G13440 632 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Lus10014603 [exp] 259 / 4e-83 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00044 [poplar] [flax] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0063 [poplar] [flax] PF02672 [poplar] [flax] CP12 CP12 domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02800 [poplar] [flax] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G254100.2 pacid=42803667 polypeptide=Potri.005G254100.2.p locus=Potri.005G254100 ID=Potri.005G254100.2.v4.1 annot-version=v4.1 ATGGCTACCCACGCAGCTCTTGCCTCTTCAAGAATCCCTGCCAATACAAGACTTCCCTCCAAGATCAACCACTCTTTCCCCACTCAAAGCTCCTTAAAGA GGCTAGAAGTGGCTGAGTTTTCTGGGCTTCGAGCCAGTTCATGTGTAACCTATGCCAAGAACGCTAGTGAGGGATCCTTCTTTGATGTGGTGGCTTCCCA ACTTGCTCCCAAGGTTGCAGTGTCAACTCCTGTTAGGGCAGAAACTGTGGCCAAATTAAAGGTGGCTATCAACGGATTTGGACGCATTGGCAGGAACTTC CTGCGATGCTGGCATGGTCGCAAAGACTCTCCCCTTGATGTAATTGTTGTCAATGACAGCGGTGGTGTCAAGAACGCTTCCCACTTGTTGAAATATGATT CAATGCTTGGAACTTTCAAAGCAGAGGTGAAAATTGTGGACAACGAGACCATCAGTGTTGATGGCAAGCCCATTAAGGTTGTTTCCAACAGAGACCCTCT TAAGCTTCCATGGGCTGAGCTCGGAATAGACATTGTTATCGAGGGAACCGGAGTTTTTGTGGATGGCCCTGGTGCTGGGAAACATATTCAAGCTGGTGCC ACGAAAGTTATCATCACTGCTCCAGCCAAAGGCGCCGATATCCCAACCTATGTTGTTGGTGTTAACGAAAAGGACTACGACCATGAGGTTGCCAACATTA TAAGTAATGCTTCTTGCACCACAAATTGTCTGGCTCCCTTTGTGAAGGTCATGGATGAGGAATTCGGCATTGTCAAGGGAACAATGACAACAACTCACTC CTACACTGGAGATCAGAGGCTCTTGGATGCTTCACACCGTGACTTGAGGAGAGCCAGGGCTGCAGCATTGAACATAGTCCCAACAAGCACTGGTGCAGCC AAAGCTGTATCTCTTGTGCTGCCTCAGCTCAAGGGCAAGCTCAATGGCATCGCACTGCGTGTCCCGACACCCAATGTTTCAGTTGTTGACCTTGTTGTGA ATGTTGAGAAGAAGGGCATTACAGCAGAAGATGTCAATGGAGCCTTCAGAAAGGCGGCTGAGGGACCATTGAAGGGTGTATTGGATGTGTGTGATGTTCC TCTTGTGTCTGTTGACTTCCGATGCTCTGATGTTTCTTCAACCATTGACTCTTCATTGACCATGGTCATGGGAGATGATATGATCAAGGTTGTCGCCTGG TATGACAATGAATGGGGATACAGCCAAAGGGTCGTTGATTTAGCACATCTTGTAGCCAACAAGTGGCCAGGAGTGGCTGCAGCAGGAAGTGGAGACCCAT TGGAGGATTTCTGCAAGACAAACCCAGCTGATGAGGAGTGCAAAGTTTATGAAGCTTAG
AA sequence Show only first row Show all	>Potri.005G254100.2 pacid=42803667 polypeptide=Potri.005G254100.2.p locus=Potri.005G254100 ID=Potri.005G254100.2.v4.1 annot-version=v4.1 MATHAALASSRIPANTRLPSKINHSFPTQSSLKRLEVAEFSGLRASSCVTYAKNASEGSFFDVVASQLAPKVAVSTPVRAETVAKLKVAINGFGRIGRNF LRCWHGRKDSPLDVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA TKVIITAPAKGADIPTYVVGVNEKDYDHEVANIISNASCTTNCLAPFVKVMDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA KAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNGAFRKAAEGPLKGVLDVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMIKVVAW YDNEWGYSQRVVDLAHLVANKWPGVAAAGSGDPLEDFCKTNPADEECKVYEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.005G254100 [exp]	0	1	Pt-GAPB.2
AT3G01060			unknown protein		Potri.017G090100 [exp]	1.00	0.9831
AT3G21690			MATE efflux family protein (.1...		Potri.011G002600 [exp]	2.00	0.9809
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Potri.004G162400 [exp]	2.00	0.9795
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.017G112700 [exp]	4.58	0.9756
AT3G14420			Aldolase-type TIM barrel famil...		Potri.001G394400 [exp]	4.89	0.9796
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.002G073000 [exp]	5.91	0.9764
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.010G180400 [exp]	8.83	0.9760
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	9.00	0.9744
AT1G62850			Class I peptide chain release ...		Potri.003G115300 [exp]	10.95	0.9475
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	11.66	0.9755	NPQ4.1

Compare expression of checked genes

Potri.005G254100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.