Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33640 395 / 6e-136 DHHC-type zinc finger family protein (.1) AT4G15080 335 / 2e-110 DHHC-type zinc finger family protein (.1) AT3G22180 315 / 6e-103 DHHC-type zinc finger family protein (.1) AT1G69420 240 / 4e-75 DHHC-type zinc finger family protein (.1.2) AT4G01730 190 / 7e-57 DHHC-type zinc finger family protein (.1) AT5G20350 65 / 1e-11 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G24630 62 / 6e-11 DHHC-type zinc finger family protein (.1) AT3G51390 59 / 7e-10 DHHC-type zinc finger family protein (.1) AT5G50020 59 / 1e-09 DHHC-type zinc finger family protein (.1.2) AT5G04270 58 / 1e-09 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006900 [exp] 545 / 0 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 327 / 3e-107 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 318 / 1e-103 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 256 / 6e-81 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 253 / 9e-80 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.014G112000 [exp] 212 / 2e-65 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 205 / 1e-62 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G061800 [exp] 68 / 1e-12 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.018G121200 [exp] 68 / 1e-12 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016036 [exp] 441 / 7e-153 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 355 / 3e-118 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 352 / 7e-117 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10030426 [exp] 265 / 2e-85 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 263 / 1e-84 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 249 / 1e-79 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 246 / 2e-77 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 216 / 1e-66 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 145 / 4e-40 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1) Lus10038108 [exp] 71 / 2e-13 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G254366.1 pacid=42804357 polypeptide=Potri.005G254366.1.p locus=Potri.005G254366 ID=Potri.005G254366.1.v4.1 annot-version=v4.1 ATGGCTAGGCGTCATGGATGGCAATTCCCTGTTCATACTTTTCAAATTGTGGCTGTAACAGTTTTCTTCCTGCTTTCTGTTGCATTCTATTCCTTTTTTG CTCCCTTCCTTGGGAAGGACATCTATGAATATGTGGCCATTGGTGTTTATTCTGTCTCGGCGCTCTCTGTATTTATTCTTTATGTACGATGCACTGCAAT TGATCCGGCTGATCCTGGAATTCTGCTAGGAGCTGATGAGACAGCAGGCCATAAATCAGAAAATGACACATATCTGCCTGGAAATTCTGCTGAAGAACCT AGCAAGACAAGGTTAAAAAATGGAGGAAAATCCAATAAATACGGTTCAAGTTGGTGTTCAAGACTCGGAGATTTCTTTTGCTGTTTTCTTGTGAAACAAG ATTGCCGAAAAGATGAAGATATTCTACAGCAAGAATCTGGAGAGGAGGCTTTGTTCTGTACACTTTGCAATGCTGAGGTACGCAAATTCAGCAAACATTG CAGAAGTTGTGACAAATGCGTTGATGGATTTGATCATCACTGCCGGTGGTTGAACAATTGTGTAGGGAAGAAAAATTACATCACATTTGTTTCCCTTATG GCAACAAGCCTTGTCTGGCTTATTGTTGAATTCGGAGTTGGTGTTGCTGTCCTTATTCGATGCTTTGTGGATAGAAAGGGTATGGATCATCAAATAATGG AGAAACTTGGCATTGGATTCTCGCGCCCCCCCTTTGCGACAGTTGTGGCCCTGTGCACATTTGTATCTTTGCTTGCCACTGTGCCTCTGGGGGAGCTATT TTTTTTCCATTTGATTCTGATTCGAAAGGGATCACAACATACGAGTATGTAG
AA sequence Show only first row Show all	>Potri.005G254366.1 pacid=42804357 polypeptide=Potri.005G254366.1.p locus=Potri.005G254366 ID=Potri.005G254366.1.v4.1 annot-version=v4.1 MARRHGWQFPVHTFQIVAVTVFFLLSVAFYSFFAPFLGKDIYEYVAIGVYSVSALSVFILYVRCTAIDPADPGILLGADETAGHKSENDTYLPGNSAEEP SKTRLKNGGKSNKYGSSWCSRLGDFFCCFLVKQDCRKDEDILQQESGEEALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGKKNYITFVSLM ATSLVWLIVEFGVGVAVLIRCFVDRKGMDHQIMEKLGIGFSRPPFATVVALCTFVSLLATVPLGELFFFHLILIRKGSQHTSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254366 [exp]	0	1
AT2G37030			SAUR-like auxin-responsive pro...		Potri.008G037900 [exp]	13.56	0.6997	SAUR40
AT2G19210			Leucine-rich repeat transmembr...		Potri.001G191701 [exp]	16.15	0.6840
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	28.01	0.6783
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.005G122200 [exp]	28.30	0.6571
					Potri.001G459001 [exp]	37.01	0.6558
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	38.65	0.6721
AT3G47295			unknown protein		Potri.009G047200 [exp]	40.98	0.6446
AT1G05380			Acyl-CoA N-acyltransferase wit...		Potri.001G153200 [exp]	41.23	0.6435
					Potri.018G060100 [exp]	41.95	0.6533
AT1G32700			PLATZ transcription factor fam...		Potri.005G130300 [exp]	43.81	0.6532

Compare expression of checked genes

Potri.005G254366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.