Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33640 138 / 4e-36 DHHC-type zinc finger family protein (.1) AT4G15080 120 / 1e-29 DHHC-type zinc finger family protein (.1) AT3G22180 98 / 4e-22 DHHC-type zinc finger family protein (.1) AT1G69420 58 / 5e-09 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006900 [exp] 501 / 6e-175 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 138 / 1e-35 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 127 / 5e-32 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 53 / 2e-07 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 50 / 2e-06 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016036 [exp] 286 / 4e-91 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 281 / 3e-90 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 120 / 2e-29 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 117 / 2e-28 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10036798 [exp] 49 / 4e-06 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 47 / 2e-05 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 46 / 3e-05 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 43 / 0.0003 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G254432.1 pacid=42802849 polypeptide=Potri.005G254432.1.p locus=Potri.005G254432 ID=Potri.005G254432.1.v4.1 annot-version=v4.1 ATGAGAACTCAGAGTGAACCACCTGGACCATCTGTTGATGGAGGAGAGCAGCAAAGCTTGCCAACTTCGCCAACCAGTTCTGCTGTTACTACAGTGAGCG GAAGAAGCTCTATAGGAATGAGTTTGCAATATAAAGGTTCTTGGTGTACCCCTCCAAGAATCTTCATGGACCATCAGGATGAAATTATTCCACATTTGGA GCCAGGACGCCTACCATCTACGGTTGATCCAGATACAGTTCACGAAGCTGACAGAGCCAAAAAGTTACCACAGCGTCCAGTTCGAATCAGTGCATGGAAA CTTGCGAAATTGGATTCCAGTGAGGCTTTTAAAGCAGCTGCAAAGGCTAGAGCATCATCATCTGTTCTACGACCCATAGGTTCTCGATATAACCTTTATG ATGCTGGTAAGTTATCCAGTAGCAATGTTAGTGGAAGGAGCAGTCCAATCAGTACTGATCAAGGGTTTCAAAATAAAAACGATAGAGCAGTGGTGACAGG TCTATCTCCTTCCAGGACTAACTCATATCCAGCCAGCAGTGCTAGTAATGCTAGCAGGGATGACATTGAGTCATGCCGTCAGAGTCGTGGCAACTTTAGC AGTGCTAATGTCTCCAACCTTGCCACATCTCCACTACAACAGCAAACTTCAAACAGCGACCACTTCAACCCCATTTATCAGACATCAACAGATCAACCTC CTTGGACAGCAAGACAAATTGAACTAAATGGGAATCCTCTTCGTGAGAATGTGGCCCAAATTCCTATGAGAAGAAACTTAGGTGTAGCTGAGAATATGAG AACAGCAGTTTATTGGGATCCAGAAGCTGGACGCTTTGTCTCTTCTTCAAGAGGTGCTGGTTCTTCGTCTCAGGTTCGAAGAACAGAGCTTTTGTACAAA GATCAATCTATATTTTTTGGAGGCCCTCTTGTCAACGAGCTGCTAAGCAGAGGGACAAGAACTGGTACTTCACTGGCTCCGAGCCAGGATAGAGGATCTA CCTCAAGTCATTATCAGCAAGGCAGGTCACAGAGGGGTGACCAACTTCATGTGTTTGTTCCAAGCGATTCTCAACAAAACCAGTATTCATCTAGGTCTCC TTAG
AA sequence Show only first row Show all	>Potri.005G254432.1 pacid=42802849 polypeptide=Potri.005G254432.1.p locus=Potri.005G254432 ID=Potri.005G254432.1.v4.1 annot-version=v4.1 MRTQSEPPGPSVDGGEQQSLPTSPTSSAVTTVSGRSSIGMSLQYKGSWCTPPRIFMDHQDEIIPHLEPGRLPSTVDPDTVHEADRAKKLPQRPVRISAWK LAKLDSSEAFKAAAKARASSSVLRPIGSRYNLYDAGKLSSSNVSGRSSPISTDQGFQNKNDRAVVTGLSPSRTNSYPASSASNASRDDIESCRQSRGNFS SANVSNLATSPLQQQTSNSDHFNPIYQTSTDQPPWTARQIELNGNPLRENVAQIPMRRNLGVAENMRTAVYWDPEAGRFVSSSRGAGSSSQVRRTELLYK DQSIFFGGPLVNELLSRGTRTGTSLAPSQDRGSTSSHYQQGRSQRGDQLHVFVPSDSQQNQYSSRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	0	1
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	2.00	0.9065
AT1G44760			Adenine nucleotide alpha hydro...		Potri.005G177100 [exp]	4.58	0.8731
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	5.65	0.8861
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.002G027501 [exp]	6.92	0.8575
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	9.79	0.8656
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	11.31	0.8703
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	11.61	0.8687
AT5G07590			Transducin/WD40 repeat-like su...		Potri.001G079100 [exp]	11.61	0.8312
AT2G25270			unknown protein		Potri.006G258700 [exp]	15.65	0.8663
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	15.87	0.8503

Compare expression of checked genes

Potri.005G254432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.