Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09190 79 / 8e-16 F-box and associated interaction domains-containing protein (.1) AT1G20790 68 / 3e-12 F-box family protein (.1) AT4G12560 63 / 1e-10 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT5G49610 61 / 4e-10 F-box family protein (.1) AT4G22390 58 / 3e-09 F-box associated ubiquitination effector family protein (.1) AT1G20795 58 / 4e-09 F-box family protein (.1) AT1G20940 56 / 2e-08 F-box family protein (.1) AT1G20240 56 / 2e-08 SWI-SNF-related chromatin binding protein (.1) AT1G53790 56 / 3e-08 F-box and associated interaction domains-containing protein (.1.2) AT1G48060 53 / 2e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254633 [exp] 772 / 0 AT4G09190 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) Potri.015G028500 [exp] 73 / 6e-14 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.007G027200 [exp] 72 / 1e-13 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.013G065500 [exp] 69 / 2e-12 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.005G043500 [exp] 68 / 2e-12 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.005G124500 [exp] 63 / 1e-10 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.001G035500 [exp] 61 / 5e-10 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G144000 [exp] 60 / 1e-09 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.013G067800 [exp] 58 / 5e-09 AT5G07610 131 / 4e-34 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041733 [exp] 67 / 7e-12 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 65 / 4e-11 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10015048 [exp] 62 / 3e-10 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 60 / 1e-09 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10042989 [exp] 51 / 2e-07 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10037802 [exp] 52 / 4e-07 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10013872 [exp] 51 / 1e-06 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10031533 [exp] 45 / 4e-05 AT1G47790 57 / 2e-09 F-box and associated interaction domains-containing protein (.1) Lus10011015 [exp] 44 / 0.0001 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10023263 [exp] 43 / 0.0001 AT3G23880 49 / 6e-07 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G254500.1 pacid=42805364 polypeptide=Potri.005G254500.1.p locus=Potri.005G254500 ID=Potri.005G254500.1.v4.1 annot-version=v4.1 ATGGAGAGACTCTGTGAGGATCTTGTCACCGACATCCTTTTATGTTTGCCAGCCAAATCTGCTGTCCGATTTAGATGTCTGAGCAAGTACTACGATCAAC TTGTGTCTGATCCTAGGTTTGCTACCAGTCATGCTCTTCGATCAAACCCTGATGAGGTACATGGTCTTCTTCGGTTTACAGGCAGGAGTGCAGATAAGAT ACTCTTCTGTTCTTTTCATTCAAAACCAAATATCCACAATAATCCTAAAGTTGTTCCCATAAATTCTCAGATCATAGCTTCTTGCAATGGCCTTGTTCTA GGTCTCTCTGATTCTAGTCTTTCTGTTTGTAACCCTATTTTACCTGATAGAATCCAGACTATACCAGCACTTGAAACCCCATATGGTGCTAAATGTGATT TAGGTTTGGCTTATGACCCAATTGGTTTCTCTTCGCTTGAATTCAAGTTAGTTCATGTTTACAGAGAACAGATCTTGAATATGCCACAAGACGAAGATGC TTATGGCTTTAAGATATTCGATTCAAGTGCAAACTCATGGAGACAATCTACATGCAAGCTGTTCTTGAGAAATTTAATTCCTATGCAGCCTCATTTTTAT GAGTTGAGAGGTCAAGCTGTGTACTTGAATGGACATGTGCACTGGTTTAGGGCCTTCGGTGATATTGTTGCGTTTAATGTAGAGAAAGAAGAAGCTACAC TCATCGGTATGCCTCCAGAACTGCGACTAGCATGGCTTAACTATCAAGATTATTCATGGTTCGGAGCTGCGGATGGTTTTCTTTATGTGGTATGTGTTTT CAAGAGACAAATTATGATGTGGGCTCTTCTTGATTATGAAAACAACAAGTGGGGGCTTGTCAGGAACAAGATCAAAGGGTTATCAAGAGTGGCTCAACCC ATTTTCTTTGATGGTGAGAGGCTTGTTCTGAATTGTGGGCCAAAAAAGAAATTATTGCGGCTGTTCAATTTGAAACAAGATCAGTGGACGGAAATGGGCA GGTTACCAAGGAATACAATGGATGACAGTACTACCGTGTATGTTCCTTTCAACCCCACCTTGGCTCCTCTGATCAACAGCAGCGATCCTTCAAGAACTGC TTCACTCCCAGTCCTTCCGACTGTGATGCCGATAAACAACAAGTGCAAGAAAAGAAAACGAGGCAGGGTCGACAGAAAGTAG
AA sequence Show only first row Show all	>Potri.005G254500.1 pacid=42805364 polypeptide=Potri.005G254500.1.p locus=Potri.005G254500 ID=Potri.005G254500.1.v4.1 annot-version=v4.1 MERLCEDLVTDILLCLPAKSAVRFRCLSKYYDQLVSDPRFATSHALRSNPDEVHGLLRFTGRSADKILFCSFHSKPNIHNNPKVVPINSQIIASCNGLVL GLSDSSLSVCNPILPDRIQTIPALETPYGAKCDLGLAYDPIGFSSLEFKLVHVYREQILNMPQDEDAYGFKIFDSSANSWRQSTCKLFLRNLIPMQPHFY ELRGQAVYLNGHVHWFRAFGDIVAFNVEKEEATLIGMPPELRLAWLNYQDYSWFGAADGFLYVVCVFKRQIMMWALLDYENNKWGLVRNKIKGLSRVAQP IFFDGERLVLNCGPKKKLLRLFNLKQDQWTEMGRLPRNTMDDSTTVYVPFNPTLAPLINSSDPSRTASLPVLPTVMPINNKCKKRKRGRVDRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09190			F-box and associated interacti...		Potri.005G254500 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.019G091600 [exp]	3.87	0.8544
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000600 [exp]	7.93	0.7697
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033800 [exp]	12.20	0.8749
AT5G35560			DENN (AEX-3) domain-containing...		Potri.018G065501 [exp]	22.04	0.6553
AT3G52130			Bifunctional inhibitor/lipid-t...		Potri.001G271000 [exp]	27.38	0.7121
AT5G59970			Histone superfamily protein (....		Potri.005G115601 [exp]	30.44	0.7990
AT5G52882			P-loop containing nucleoside t...		Potri.012G035400 [exp]	37.14	0.7738
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G148200 [exp]	37.52	0.8177
AT4G09190			F-box and associated interacti...		Potri.005G254633 [exp]	38.72	0.8244
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	47.49	0.6913

Compare expression of checked genes

Potri.005G254500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.