Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09190 80 / 3e-16 F-box and associated interaction domains-containing protein (.1) AT1G20790 62 / 2e-10 F-box family protein (.1) AT5G49610 62 / 2e-10 F-box family protein (.1) AT1G20795 57 / 7e-09 F-box family protein (.1) AT1G20240 56 / 2e-08 SWI-SNF-related chromatin binding protein (.1) AT1G20940 56 / 2e-08 F-box family protein (.1) AT4G22390 55 / 3e-08 F-box associated ubiquitination effector family protein (.1) AT4G12560 54 / 1e-07 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G53790 52 / 5e-07 F-box and associated interaction domains-containing protein (.1.2) AT1G57565 50 / 6e-07 SWI-SNF-related chromatin binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254500 [exp] 772 / 0 AT4G09190 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Potri.007G027200 [exp] 69 / 1e-12 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.015G028500 [exp] 66 / 1e-11 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.010G254000 [exp] 63 / 1e-10 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.005G124500 [exp] 60 / 1e-09 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.005G043500 [exp] 59 / 2e-09 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.013G065500 [exp] 59 / 2e-09 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.008G144000 [exp] 58 / 5e-09 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 56 / 3e-08 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041733 [exp] 68 / 4e-12 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 66 / 1e-11 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10015048 [exp] 62 / 2e-10 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 59 / 3e-09 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 52 / 3e-07 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10042989 [exp] 50 / 3e-07 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10013872 [exp] 49 / 4e-06 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10023263 [exp] 44 / 9e-05 AT3G23880 49 / 6e-07 F-box and associated interaction domains-containing protein (.1) Lus10031533 [exp] 44 / 0.0001 AT1G47790 57 / 2e-09 F-box and associated interaction domains-containing protein (.1) Lus10011015 [exp] 42 / 0.0006 AT3G06240 94 / 7e-21 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G254633.1 pacid=42803341 polypeptide=Potri.005G254633.1.p locus=Potri.005G254633 ID=Potri.005G254633.1.v4.1 annot-version=v4.1 ATGGAGAGACTCTGTGAGGATCTTGTCACCAACATCCTTTTATGTTTGCCAGCCAAATCTGCTGTCCGATTTAGATGTCTGAGCAAGTACTACGATCAAC TTGTGTCTGATCCTAGGTTTGCTACCAGTCATGCTCTTCGATCAAACCCTGATGAGGTACTTGGTCTTCTTCGGTTTACAGCAGGTAGGAGTGCAGATAA GATACTCTTCTGTTCTTTTCATTCAAAACCAAATATCCACAATAATCCTAAAGTTGTTCCCATAAATTCTCAGATCATAGCTTCTTGCAATGGCCTTGTT CTAGGTCTCTCTGATTCTAGTCTTTCTGTTTGTAACCCTATTTTACCTGATAGAATCCAGACTATACCAGCACTTGAAACCCCATATGGTGCCAAATGTG ATTTAGGTTTGGCTTATGACCCAGTTGGTTTCTCTTCGCTTGAATTCAAGTTAGTTCATGTTTACAGAGAACAGATCTTGAATATGCCACAAGATGAAGA TGCTTATGGCTTTAAGATATTCGATTCAAGTGCAAACTCATGGAGACAATCTACATGCAAGCTGTTCTTGAGACATTTAATTCCTATGCAGCCTCATTTT TATGAGTTGAGAGGTCAAGCTGTGTACTTGAATGGACATGTGCACTGGTTTAGGGCCTTCGGTGATATTGTTGCGTTTAATGTAGAGAAAGAAGAAGCTA CACTCATCGGTATGCCTCCAGAACTGCGACTAGCATGGCTTAACTACCAAGATTATTCATGGTTCGGAGCTGCGGATGGTTTTCTTTATGTGGTATGTGT TTTCAAGAGACAAATTCTGATGTGGGCTCTTCTTGATTATGAAAACAACAAGTGGGGGCTTGTCAGGAACAAGATCAAAGGGTTATCAAGGGTGGCTCAA CCCATTTTCTTTGATGGTGAGAGGCTTGTTCTGAATTGTGGGCCAAAAAAGAAATTATTGCGGCTGTTCAATTTGAAACAAGATCAGTGGACGGAAATGG GCAGGTTACCAAGGAATACAATGGATGACAGTACTACCGTGTATGTTCCTTTCAACCCCACCTTAGCTCCTCTGATGAACAGCAGCGATCCTTCAAGAAC TGCTTCACTCCCAGTCCTTCCGACTGTGATGCCGATAAACAACAAGTGCCAGAAAAGAAAACGAGGCAGGGTCGACAGAAAGTAG
AA sequence Show only first row Show all	>Potri.005G254633.1 pacid=42803341 polypeptide=Potri.005G254633.1.p locus=Potri.005G254633 ID=Potri.005G254633.1.v4.1 annot-version=v4.1 MERLCEDLVTNILLCLPAKSAVRFRCLSKYYDQLVSDPRFATSHALRSNPDEVLGLLRFTAGRSADKILFCSFHSKPNIHNNPKVVPINSQIIASCNGLV LGLSDSSLSVCNPILPDRIQTIPALETPYGAKCDLGLAYDPVGFSSLEFKLVHVYREQILNMPQDEDAYGFKIFDSSANSWRQSTCKLFLRHLIPMQPHF YELRGQAVYLNGHVHWFRAFGDIVAFNVEKEEATLIGMPPELRLAWLNYQDYSWFGAADGFLYVVCVFKRQILMWALLDYENNKWGLVRNKIKGLSRVAQ PIFFDGERLVLNCGPKKKLLRLFNLKQDQWTEMGRLPRNTMDDSTTVYVPFNPTLAPLMNSSDPSRTASLPVLPTVMPINNKCQKRKRGRVDRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09190			F-box and associated interacti...		Potri.005G254633 [exp]	0	1
					Potri.014G065951 [exp]	3.87	0.9925
					Potri.011G026450 [exp]	8.77	0.9909
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.015G005801 [exp]	14.00	0.9923
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.016G056400 [exp]	18.97	0.9696
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	22.04	0.9906
AT1G74875			unknown protein		Potri.013G008800 [exp]	23.66	0.9881
AT5G59970			Histone superfamily protein (....		Potri.005G115601 [exp]	25.69	0.8495
AT2G25730			unknown protein		Potri.018G035601 [exp]	25.74	0.9854
AT5G47540			Mo25 family protein (.1)		Potri.003G055900 [exp]	25.92	0.9874
					Potri.002G020750 [exp]	28.39	0.9782

Compare expression of checked genes

Potri.005G254633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.