Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20810 273 / 3e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 100 / 9e-26 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 49 / 2e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G18170 46 / 6e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 44 / 3e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 44 / 6e-05 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT3G12340 40 / 0.001 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096600 [exp] 92 / 2e-22 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G467100 [exp] 48 / 1e-06 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 42 / 0.0002 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.012G129200 [exp] 41 / 0.0004 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.001G075500 [exp] 40 / 0.0007 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016037 [exp] 289 / 1e-99 AT1G20810 258 / 2e-87 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10025158 [exp] 264 / 2e-89 AT1G20810 236 / 3e-78 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 86 / 2e-20 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027729 [exp] 74 / 1e-15 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 46 / 1e-05 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 46 / 2e-05 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10031342 [exp] 43 / 7e-05 AT1G18170 261 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10015029 [exp] 44 / 8e-05 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038905 [exp] 43 / 8e-05 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10038954 [exp] 40 / 0.0007 AT1G18170 193 / 1e-61 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Potri.005G254900.1 pacid=42804731 polypeptide=Potri.005G254900.1.p locus=Potri.005G254900 ID=Potri.005G254900.1.v4.1 annot-version=v4.1 ATGGCTTCAACAAGGAGCTTAGACAAATGGAGTGGTCATCGTCATCTTCAAAATTTAGCTGAATCTACCCCAAAAAAAACACAAGAACAATCAAACCATG TTTTTCTCTCAAAACCCACTTCAAGAAGATGTGCGATTTTGATATCTACCTTGCCTTTTACCCTCACTTCACTACCTCAATTATCTGAGGCCAGAGAGAG ACGCAACAAGAAGACCATCCCTCTTGAAGACTATCTCACTAGCCCAGCTGATGGATTGAAGTACTATGATGTTCTCGAGGGAAAGGGTGCAGCAGCAGAA AAGGGAATGACAGTTCAGGTGCATTTTGACTGTCTATATAGGGGAATAACAGCCATTTCGAGTCGAGAATCTAAGCTTTTAGCTGGAAATCGAATAATTG CACAGCCATATGAGTTCAAGGTTGGGGCACCACCAGGCAAAGAAAGGAAGCGTGAATTTGTGGACAACCCAAATGGTCTATTTTCTGCACAGGCTGCACC CAAACCTCCTCCAGCTATGTACTCGGTAACGGAAGGGATGAAAGTTGGAGGGAAGAGGACTGTGATTGTTCCTCCAGAGGCTGGTTATGGACAAAAAGGA ATGAATGAGATTCCGCCAGGAAGTTCATTTGAATTGAACATTGAGCTTCTGCAAGTAATGCCAGCTGAAGGAAAGTAG
AA sequence Show only first row Show all	>Potri.005G254900.1 pacid=42804731 polypeptide=Potri.005G254900.1.p locus=Potri.005G254900 ID=Potri.005G254900.1.v4.1 annot-version=v4.1 MASTRSLDKWSGHRHLQNLAESTPKKTQEQSNHVFLSKPTSRRCAILISTLPFTLTSLPQLSEARERRNKKTIPLEDYLTSPADGLKYYDVLEGKGAAAE KGMTVQVHFDCLYRGITAISSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYGQKG MNEIPPGSSFELNIELLQVMPAEGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Potri.005G254900 [exp]	0	1
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.013G148900 [exp]	1.00	0.9845	Pt-PETC.2
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	2.82	0.9834
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	4.24	0.9828	TMP14.1
AT1G51080			unknown protein		Potri.008G004800 [exp]	5.47	0.9791
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	5.65	0.9819	RBP29.1
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036800 [exp]	6.32	0.9784
AT5G52030			TraB family protein (.1.2)		Potri.012G133900 [exp]	6.92	0.9753
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Potri.006G060100 [exp]	7.00	0.9785
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.002G062100 [exp]	9.48	0.9781
AT4G26530			Aldolase superfamily protein (...		Potri.011G165000 [exp]	9.59	0.9727	Pt-FBA.1

Compare expression of checked genes

Potri.005G254900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.