Plant FIBer expression Database

Potri.005G255000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76400 816 / 0 Ribophorin I (.1)
AT2G01720 462 / 3e-158 Ribophorin I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G006600
[exp]
1081 / 0 AT1G76400 817 / 0.0 Ribophorin I (.1)
Potri.010G223500
[exp]
504 / 1e-174 AT2G01720 683 / 0.0 Ribophorin I (.1)
Potri.008G038700
[exp]
499 / 1e-172 AT2G01720 677 / 0.0 Ribophorin I (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025159
[exp]
886 / 0 AT1G76400 843 / 0.0 Ribophorin I (.1)
Lus10016038
[exp]
597 / 0 AT1G76400 595 / 0.0 Ribophorin I (.1)
Lus10040410
[exp]
472 / 4e-162 AT2G01720 645 / 0.0 Ribophorin I (.1)
Lus10023524
[exp]
472 / 6e-162 AT2G01720 650 / 0.0 Ribophorin I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04597 Ribophorin_I Ribophorin I
Representative CDS sequence
>Potri.005G255000.1 pacid=42805101 polypeptide=Potri.005G255000.1.p locus=Potri.005G255000 ID=Potri.005G255000.1.v4.1 annot-version=v4.1
ATGGGATTTCGTTTTGATTTACTTTTGTTGTTTACGACACTTGTTTTACTCTCAACAACAACTCCTACTGTACTTTCCGATGTCATTCTCTCCAAAGTCG
ATCGCCGTATTGATTTGACTTCTCAAATTGTGCGCGTTGCGTCTACATTAAAGGTGGAGAATGCTGGTCCTGGTCCAGTTTCTGAGGTTTTGCTCACCTT
TCCTGAGATTCAGGCAAAAAATTTAGCATATTTGAAGGCAACCCTTAATGAGGGTAAAGGGAAAGTGAAAAACTCAGGTAGTAACCTCCCCATAAATGTT
GCCAATCCAGAGGAATTGCCTCCATCTCTGATTTTTCATTCAGTATCATTACCTAAGGCTTTGGGTGAAGGAGATAGTTTGACTATAGATGTGTTCGCAG
TATTTACTCATGTATTACGGCCATTTCCTGAGGAAATTACACAAGCTGATATTCAGCTAGTTTTGTTCCAAGATACTGCTCACTATCTCTCCCCTTATGC
AGTTAAGGTTCAGTCCCTTACTGTTAAATTGCCCAAGGCTAGAATAGAAATGTATACGAAATTAGAGAATACTAATATCCATGGCTCTGATATCAAATAT
GGCCCATATGAAAACCTTCCTCCCTTTTCATATGCACCCGTAGTTGTTCACTTTGAAACCAATCAACCATTTGCTGTTGCTCAAGAGTTAGTGAGGGAGA
TAGAAATTTCCCATTGGGGCAATGTGCAAGTTACAGAACACTATAACATTGTCCATGGAGGTGCTAAAAGTAAGGGTGAATTTTCCAGGCTTGACTTTCA
GGCTAGACCACACCTTCGAGGTGCATCAGCCTTCAGGAATCTTGTTGCAAAATTGCCACCAAGAGCTCATTCCATTTATTATAGAGATGAGATTGGAAAT
ATTTCAACATCTAATGTCTGGGGTGATCCTAAAAAGACAGAACTGTTGATTGAACCTAGATATCCGTTGTTTGGAGGCTGGAGAACTACTTTTACCATTG
GATATGGTTTGCCACTTCAAGATTTTTTATTTGGGTCAGAGGGGAAACGTTTCCTTAACTTCTCTTTTGGTTCCCCAATAAATGATTTGGTCACTGATAA
TATCATTGTGAAGGTTGTTTTGCCAGAGGGATCTGATGATATATCTATTTCTACTCCCTTTCCTGTAAAACAAGGACAAGAGACCAAAATTTCCCACTTA
GATGTTGCTGGGAGACCAGTTGTTGTGCTGGAAAAGACCAATGTTGTTCCTGAACATAATCAGTATTTCCAGGTCTATTATAGGTTCAACAAACTTTCGA
TGCTTAGGGAGCCATTTATGTTGATTTCTGGATTTTTCATCCTTTTTGTTTCTTGCATCGTATACATGCATGTGGACTTGTCAATCTCGAAGTCCTCTGC
CTCTTATTTGGCAAAACTGCAGTGGGATGAGGTGCGAGCAACAATTCAGCAAGTCATAAGTATTATCAACCAGTGCCTATCTAAGCATGAAAGGTTAGAA
GCATCACTGCATGATCTTTCTAGGACTGGGGATGTTCAAGCTTGTAAAACTGCTCGAAAGACTGCTGACAGCTTGTTTAAAGAGTATTCCAAAGAGTTGA
AGCCGTTGCTTTCATTCTTGCAATCTTCTCCTCAGGCTACTCAGATATTGCCAAAGGTGGAGGAGCTGGTGGCGAAGGAGAAGGAATTGCAAGAGAGGCT
GATAGCAAAGCATTCAACCATAGTGGACTGCTATGAGAAGAAGATTGGAGGAAGGGAACTTGAGAATCGGGTTGCTTCACATCAACTAAAAGTTGCAGCT
TTGAAGCAGGAGGTTGAAGATCTTCTTGACTACGTTGAAGAAATATAG
AA sequence
>Potri.005G255000.1 pacid=42805101 polypeptide=Potri.005G255000.1.p locus=Potri.005G255000 ID=Potri.005G255000.1.v4.1 annot-version=v4.1
MGFRFDLLLLFTTLVLLSTTTPTVLSDVILSKVDRRIDLTSQIVRVASTLKVENAGPGPVSEVLLTFPEIQAKNLAYLKATLNEGKGKVKNSGSNLPINV
ANPEELPPSLIFHSVSLPKALGEGDSLTIDVFAVFTHVLRPFPEEITQADIQLVLFQDTAHYLSPYAVKVQSLTVKLPKARIEMYTKLENTNIHGSDIKY
GPYENLPPFSYAPVVVHFETNQPFAVAQELVREIEISHWGNVQVTEHYNIVHGGAKSKGEFSRLDFQARPHLRGASAFRNLVAKLPPRAHSIYYRDEIGN
ISTSNVWGDPKKTELLIEPRYPLFGGWRTTFTIGYGLPLQDFLFGSEGKRFLNFSFGSPINDLVTDNIIVKVVLPEGSDDISISTPFPVKQGQETKISHL
DVAGRPVVVLEKTNVVPEHNQYFQVYYRFNKLSMLREPFMLISGFFILFVSCIVYMHVDLSISKSSASYLAKLQWDEVRATIQQVISIINQCLSKHERLE
ASLHDLSRTGDVQACKTARKTADSLFKEYSKELKPLLSFLQSSPQATQILPKVEELVAKEKELQERLIAKHSTIVDCYEKKIGGRELENRVASHQLKVAA
LKQEVEDLLDYVEEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76400 Ribophorin I (.1) Potri.005G255000
[exp]
0 1
AT1G60660 B5 #5, B5#5, AT... ARABIDOPSIS CYTOCHROME B5-LIKE... Potri.018G087600
[exp]
3.60 0.8915 B5.1
AT5G49510 PFD3, PDF3 prefoldin 3 (.1.2) Potri.010G147600
[exp]
6.63 0.8806
AT3G14290 PAE2 20S proteasome alpha subunit E... Potri.003G072500
[exp]
10.00 0.8882 PAE1.2
AT4G30996 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE ... Potri.018G111100
[exp]
19.44 0.8391
AT4G29480 Mitochondrial ATP synthase sub... Potri.006G232000
[exp]
24.53 0.8708
AT1G52600 Peptidase S24/S26A/S26B/S26C f... Potri.001G171200
[exp]
24.79 0.8750
AT3G52300 ATPQ "ATP synthase D chain, mitocho... Potri.010G217800
[exp]
25.21 0.8712
AT1G73230 Nascent polypeptide-associated... Potri.012G037900
[exp]
25.27 0.8824
AT2G37975 Yos1-like protein (.1) Potri.008G063000
[exp]
37.96 0.8174
AT1G16560 Per1-like family protein (.1.2... Potri.007G065800
[exp]
40.39 0.8617

Potri.005G255000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.