Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20830 330 / 1e-111 MCD1 multiple chloroplast division site 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006300 [exp] 522 / 0 AT1G20830 331 / 7e-112 multiple chloroplast division site 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030727 [exp] 326 / 2e-109 AT1G20830 303 / 6e-101 multiple chloroplast division site 1 (.1) Lus10013209 [exp] 321 / 2e-107 AT1G20830 294 / 1e-97 multiple chloroplast division site 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G255300.1 pacid=42804489 polypeptide=Potri.005G255300.1.p locus=Potri.005G255300 ID=Potri.005G255300.1.v4.1 annot-version=v4.1 ATGGCAACAACATCATCAATTTCGACTCCGCAATTTCACTCTTTCTCTATCCAGCCGCCGTCATCGTTATGGGCATCAAAACACCGGTTTTCTCCGAATG TAGTGAAACTCAGGAGGGATTTTGTCTTGTCTTTTTCACTACCCAATTGCAATCGAGTTTTGTTAATTAATCCAAAGTTTCGATTTAGAGCTGCAATTAA TAATGATAATGATAATTCGGCGAATCCCGAAGACGAAGAGGTCGAGGAACAATGTATTCAAGACAAGGGAAAAACAGTGGTCAACAAGAGTGAGAGTGAG AGTGGGACCTCTGCACTACTGGATTGGAAAAAAGACCCAATTTCCAAATTTCAGGGAATGATTACCACTCTCCCTCCTTTTGTTTTTGTGATGAAAAGAG GTGCTGGAAGCAATTTTGTAATATGGCTATGTATTGCTACTGCATTTTTGGTTGTTTCTGTGAGAGTATACATGGTTAGGAAGTCAAGGCCAAGCCGTCC TGGCTCTGTAGCTGATCTTGTTAGACGTGGCCAGCTGAGATCGGATAGAAGAGGCATATCAAGTCCTCTCAAATATGAGGATCCATTCAATAATCCATTG GTTAAAGTTGGCAAGAGCAATTCAACCATTGAGATATTTGGAAAGGTTTATCTCTTAGCCCCAGTTACTCTAACGGAAGAGCAACAAGCCATCCATCAGA GAAGGAGATCGCGAGCATACCAGTGGAAAAGACCAACCATTTTCCTTAAAGAAGGGGATCCAGTACCTCCTGATGTTGACCCTGACACAGTCAGATGGAT TCCTACAAATCATCCTTTTGCAACTACTGCTAGTGACATTGACGAAGACTTGGCTCAAAACAATGTATATCAAAAGCATGGTGTTCCATTCCGTATAAAA GCTGAGCATGAGGCACTACAAAGAAAACTAGAAGCACTACAAAATGAGCAAAAACTCAATAAATTAGTCATTGACACCGGAAATGCTAAAGAATTTGAGA GACCATTCAGGTTTAATCCAAAGTCAAATGAGCTTGTCGAACAGAACCCCTTTAAAAGTCAATCTGGCGATTCTAAGCCTTCGCAATCAGATCGTGCCCC AAATCCTTTTAACAGCAGTTCATCCTCAGAGGAAATGCAGAAGCCCTAA
AA sequence Show only first row Show all	>Potri.005G255300.1 pacid=42804489 polypeptide=Potri.005G255300.1.p locus=Potri.005G255300 ID=Potri.005G255300.1.v4.1 annot-version=v4.1 MATTSSISTPQFHSFSIQPPSSLWASKHRFSPNVVKLRRDFVLSFSLPNCNRVLLINPKFRFRAAINNDNDNSANPEDEEVEEQCIQDKGKTVVNKSESE SGTSALLDWKKDPISKFQGMITTLPPFVFVMKRGAGSNFVIWLCIATAFLVVSVRVYMVRKSRPSRPGSVADLVRRGQLRSDRRGISSPLKYEDPFNNPL VKVGKSNSTIEIFGKVYLLAPVTLTEEQQAIHQRRRSRAYQWKRPTIFLKEGDPVPPDVDPDTVRWIPTNHPFATTASDIDEDLAQNNVYQKHGVPFRIK AEHEALQRKLEALQNEQKLNKLVIDTGNAKEFERPFRFNPKSNELVEQNPFKSQSGDSKPSQSDRAPNPFNSSSSSEEMQKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20830		MCD1	multiple chloroplast division ...		Potri.005G255300 [exp]	0	1
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	7.14	0.9170
AT2G43540			unknown protein		Potri.007G134400 [exp]	10.39	0.8866
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Potri.006G087300 [exp]	26.38	0.8618
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.002G114600 [exp]	26.40	0.8824
					Potri.017G154900 [exp]	27.92	0.8945
AT5G47435			formyltetrahydrofolate deformy...		Potri.003G078000 [exp]	31.30	0.8590
AT5G12040			Nitrilase/cyanide hydratase an...		Potri.006G222900 [exp]	37.73	0.8829
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	43.24	0.8865
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108301 [exp]	44.74	0.8842
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	45.59	0.8863

Compare expression of checked genes

Potri.005G255300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.