Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35300 915 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT1G20840 827 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT3G51490 804 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT3G18830 141 / 3e-35 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G30220 141 / 4e-35 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G36670 129 / 2e-31 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G35740 129 / 3e-31 ATINT3 nositol transporter 3 (.1) AT4G16480 129 / 6e-31 ATINT4 inositol transporter 4 (.1) AT2G16130 127 / 1e-30 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G20780 126 / 2e-30 AtPLT4 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006200 [exp] 1252 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.009G168500 [exp] 982 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 959 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G098900 [exp] 835 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G151725 [exp] 137 / 2e-34 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G015300 [exp] 139 / 3e-34 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.004G152300 [exp] 138 / 3e-34 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 132 / 2e-32 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 131 / 3e-32 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030726 [exp] 1002 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022988 [exp] 995 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10013208 [exp] 978 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 977 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 966 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 870 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10012709 [exp] 708 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10010886 [exp] 686 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10028118 [exp] 144 / 6e-36 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017561 [exp] 144 / 8e-36 AT4G16480 820 / 0.0 inositol transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G255400.1 pacid=42805392 polypeptide=Potri.005G255400.1.p locus=Potri.005G255400 ID=Potri.005G255400.1.v4.1 annot-version=v4.1 ATGAAGGGAGCAGCACTAGTGGCTATTGCTGCTTGCATTGGTAACTTCTTGCAAGGATGGGATAATGCTACCATTGCTGGTGCTATCATTTACGTCAATA AAGACCTCAAGTTGCAAGCAAGTGTGGAAGGTCTTGTTGTGGCCATGTCACTTATTGGAGCAGCTGCTATCACAACATGCTCAGGACCCATATCGGATTG GCTCGGTCGGCGTCCAATGCTAATAATCTCATCCATTCTCTACTTTGTCAGTGGTTTGGTAATGTTTTGGTCGCCCAATGTTTACGTCCTGTGCATAGGA AGACTGTTAGATGGATTTGGCATTGGTTTAGCAGTTACTCTTGTTCCAGTCTATATATCTGAGACTGCCCCATCAGATATAAGGGGAATGTTAAATACTC TACCTCAGTTTGCTGGTTCAGGTGGCATGTTTCTGTCATACTGTATGATTTTTGGGATGTCATTGACAGCTTCACCTAGTTGGAGGTTGATGCTTGGAAT ACTTTCCATTCCTTCTTTACTATATTTTGCACTCACAGTGTTTTACTTGCCTGAATCTCCTCGATGGCTTGTGAGTAAAGGAAAGATGCTTGAGGCAAAG CGGGTTCTCCAGAGATTGCGTGGCAGGGAAGATGTTTCAGGCGAGATGGCTTTACTGGCTGAAGGTCTTGGTATCGGGGGTGAAACATCCATAGAAGAGT ACATAATAGGCCCTGCTGATGAACTCGCTAATGGTCAAGAACCCACTGTTGATAAAGACAAAATCAAGTTATATGGACCTGAAGAAGGCCTTTCCTGGGT TGCTAAACCCGTTACTGGACAGAGTTCTCTTGCTCTTGCATCACGCCATGGAAGCATGGTGAGCCAAGGCGTGCCTCTTATGGACCCTCTTGTGACTCTT TTTGGTAGTGTTCATGAAAAGCTCCCTGAGACAGGAAGCATGCGAAGCATGCTTTTCCCTAATTTTGGCAGCATGTTTAGTACAGCAGAACCTCACTTTA GGACTGAGCAATGGGATGAAGAGAGTGTACAAAGAGAAGGTGAGGGCTACACATCAGAGGCTGGTGGTGGGGATTCCGATGACAATTTGCAGAGTCCACT AATCTCACGCCAGACAACAAGCATGGAAAAGGATATGGCCCACCCAACTTCCCATGGCAGTGTTCTGAGCATGAGACGGCATAGCAGTCTAATGCAAGGA GTTGGGGATGCAGTTGACGGTACTGGCATTGGTGGGGGTTGGCAGTTGGCATGGAAATGGTCTGAGAGGGAAGGTGAGGATGGAAAGAAGGAAGGGGGAT TTAAAAGGATTTATCTGCACCAAGGAGGAGTTCCTGGATCCCGACGCGGGTCTCTTGTTTCGCTTCCTGGTGGTGATGTTCCTGAAGAAGGTGAGTACAT CCAGGCTGCTGCTCTGGTAAGCCAGCCTGCTCTTTATTCAAAGGAGCTTATGGACCAGCATCCAGTTGGACCCGCAATGGTTCACCCATCTCAAACAGCT ACAAAAGCTCCAATTTGGACCGCTCTGCTTGAACCTGGAGTTAAGCATGCATTGTTTGTTGGGATTGGAATTCAATTACTTCAGCAGTTTGCTGGCATAA ATGGGGTTCTATACTACACCCCTCAAATTCTTGAAAAGGCAGGTGTTTCGGTTCTTCTTGCTAACCTGGGCCTCAGCACTACCTCTGCGTCATTCCTTAT AAGCGCATTTACAAACTTTCTTATGCTTCCATGCATAGGTGTAGCGATGAGGCTCATGGATATCGCGGGGAGAAGGACGCTCCTACTTACCACAATTCCT GTGCTGATACTTTCCCTCATCGTCTTAATTATTTTTGAACTAGTGACTGTGAGCTCAGTCGTCAACGCTGCAATTTTAACTGCTTGTGTTATCATATTCA TCTGCTGTTTTGTGTCTGCTTATGGACCAATTCCTAATATCCTCTGCTCAGAGATCTTCCCCACAAGAGTCCGAGGCCTCTGCATTGCCATTTGTGCCAT GGTTTACTGGATTGGAGACATCATTGTCACCTACACACTGCCTGTGATGCTTAGCTCGATTGGCCTAGTCGGTATCTTTGGCATTTATGCTGTTGTGTGC GCAATCTCTTGGATCTTTGTTTTCTTGAAGGTCCCTGAGACCAAAGGAATGCCTCTTGAAGTCATTACAGAGTTCTTTGCGGTTGGCGCCAAACAAGCTG CTGCCAAGAAGGAATGA
AA sequence Show only first row Show all	>Potri.005G255400.1 pacid=42805392 polypeptide=Potri.005G255400.1.p locus=Potri.005G255400 ID=Potri.005G255400.1.v4.1 annot-version=v4.1 MKGAALVAIAACIGNFLQGWDNATIAGAIIYVNKDLKLQASVEGLVVAMSLIGAAAITTCSGPISDWLGRRPMLIISSILYFVSGLVMFWSPNVYVLCIG RLLDGFGIGLAVTLVPVYISETAPSDIRGMLNTLPQFAGSGGMFLSYCMIFGMSLTASPSWRLMLGILSIPSLLYFALTVFYLPESPRWLVSKGKMLEAK RVLQRLRGREDVSGEMALLAEGLGIGGETSIEEYIIGPADELANGQEPTVDKDKIKLYGPEEGLSWVAKPVTGQSSLALASRHGSMVSQGVPLMDPLVTL FGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHFRTEQWDEESVQREGEGYTSEAGGGDSDDNLQSPLISRQTTSMEKDMAHPTSHGSVLSMRRHSSLMQG VGDAVDGTGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHQGGVPGSRRGSLVSLPGGDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSQTA TKAPIWTALLEPGVKHALFVGIGIQLLQQFAGINGVLYYTPQILEKAGVSVLLANLGLSTTSASFLISAFTNFLMLPCIGVAMRLMDIAGRRTLLLTTIP VLILSLIVLIIFELVTVSSVVNAAILTACVIIFICCFVSAYGPIPNILCSEIFPTRVRGLCIAICAMVYWIGDIIVTYTLPVMLSSIGLVGIFGIYAVVC AISWIFVFLKVPETKGMPLEVITEFFAVGAKQAAAKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G255400 [exp]	0	1
AT3G43120			SAUR-like auxin-responsive pro...		Potri.018G132400 [exp]	3.16	0.8020
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	3.74	0.8049
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155300 [exp]	3.87	0.7967
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.019G111700 [exp]	4.00	0.7530
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	9.53	0.7560	AUX1.1
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	10.67	0.7594
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	10.81	0.6894
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	11.26	0.6135
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.014G156600 [exp]	15.29	0.7401
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	17.32	0.7481

Compare expression of checked genes

Potri.005G255400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.