Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42550 754 / 0 PMI1 plastid movement impaired1 (.1) AT5G20610 119 / 3e-27 unknown protein AT5G26160 115 / 3e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006100 [exp] 1214 / 0 AT1G42550 796 / 0.0 plastid movement impaired1 (.1) Potri.006G224200 [exp] 119 / 3e-27 AT5G26160 641 / 0.0 unknown protein Potri.006G145500 [exp] 112 / 7e-25 AT5G20610 565 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039886 [exp] 940 / 0 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10002170 [exp] 940 / 0 AT1G42550 818 / 0.0 plastid movement impaired1 (.1) Lus10017162 [exp] 104 / 2e-22 AT5G20610 762 / 0.0 unknown protein Lus10021568 [exp] 101 / 1e-21 AT5G20610 827 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.005G255500.1 pacid=42805018 polypeptide=Potri.005G255500.1.p locus=Potri.005G255500 ID=Potri.005G255500.1.v4.1 annot-version=v4.1 ATGGCAACAGATAGAAGGAATTCAAATACTCAGCTTTTGGAAGAGCTCGAAGAACTCAGCCAATCTCTTTACCAAACTCACACTTCCAGCGCCCGAAGAA CTGCTTCCCTCGTACTTCCTCGAAATTCAGTCCCTTCTATAACATCAGCAGATGAGGTTACAACGGCCAAAATTGATGAAAAATCAAGCAGCAGGCCTCG GTCCAGGCGCATGTCATTGTCGCCTTGGCGTTCTAGGCCAAAACCTGACGAAGAAACCGAGCGCAAAACAACCAATATCAATCAACCAGGAATTAAGAAG CTGGATGATATATCTTCTGCAACAGAGAGAAAAGGGATTTGGAATTGGAAGCCAATCCGTGCTATTTCTCATATTGGGATGCAGAAATTGAGCTGTTTGT TCTCTGTTGAAGTAGTTGCTGTGCAAGGCCTTCCAGCTTCGATGAATGGACTCCGGCTTTCTGTTTGTGTTAGGAAGAAGGAAACAAAAGATGGTGCAGT TAATACAATGCCCTCAAGGGTTTCACAAGGAGCTGGTGACTTTGAAGAGACCTTGTTTATCAAGTGTCATGTGTACTGCACTCCTGGCAATGGGAAGCAG CTTAAATTTGAGCAGCGTCCATTTTTTATTTATGTGTTTGCAGTTGATGCTGAAGCGCTTGATTTTGGGAGAACTTCAGTGGATTTAAGTGAACTTATTC AGGAATCCATAGAGAAGAGCCAAGAAGGTACTCGAGTGCGGCAGTGGGACACAAGTTTCAGCCTGTCCGGGAAGGCAAAAGGAGGAGAGCTTGTTCTCAA ATTGGGATTTCAGATTATGGAGAAAGAAGGAGGGATTGATATTTATAGTCAAGCTGAAGTATCGAAGACTACTAAATTCAAAAATTTCTCATCTTCTTTG GGACGCAAGCAGTCTAAATCGTCCTTCAGTGTCTCGAGTCCAAGGATGACATTACGATCCGAAACTTGGACTCCTTCACAGACAAAACCAGCTGCGGATA TACAAGGAATGGATGACTTGAATCTTGATGAGACAGCTCCAGTTCCCTCACCACCCCCCTCAATTCAGAAATCAGAAGAACCAGAACAAAAGATAGAGGA CCTTGATCTTCCAGATTTCGAAATTGTGGATAAAGGGGTGGAGATTCAAGACAAAGAAGATAGTGGCGATGGAGAATCTGAAGAAAATGTGGAAGAAAAA TCACAATCAAGTGAAGTTGTTAAGGAAATAGTGCATAATCAAGTACACCTGACAAGACTAACCGAACTCGATTCAATCGCTGAGCAGATAAAAGTTCTTG AGTCCATGATGGGAGAAGAAAAAACTGCTAAGACAGACGATGAAACTGAATCACAAAAATTAGATGCGGATGAAGAAACAGTAACGAAGGAATTTCTCCA GATGCTCGAAGATGAAGAAACTGATTCATTCAAATTCAATCAACCTGAAATCCCCACTCTGCATCTCGATGGAGGTGATGATAGTACAGAAGCTGAATCC AAGGTATATCTCTCAGAACTTGGGAAGGGTTTAGGCTGTGTAGTTCAAACAAGAGATGGAGGCTACCTAGCAGCTACGAACCCACTAGATACCATTGTTT CAAGGAAAGATACTCCAAAACTAGCAATGCAGCTGTCGAAGCCACTCGTTCTTCAATCAGACAAATCCATGAACGGGTTTGAATTGTTTCAGAGAATGGC ATCCATTGGTTTTGAGGAACTTTGTTCTCAAATCTTATCACTGATGCCCCTAGATGAACTGTTAGGGAAAACTGCAGAACAGATAGCTTTTGAAGGCATA GCTTCTGCAATCATCCAAGGGAGAAACAAAGAAGGCGCTAGTTCAAGTGCTGCTCGTACTATTGCTGCCGTTAAAACAATGGCGACGGCGATGAGTACAG GCAGGAAAGAGAGGATTTCAACAGGAATTTGGAACGTAAATGAAAACCCTTTGACAGCTGAGGAAGTTCTGGCATTCTCATTGCAGAAGATTGAGGTAAT GGCAATTGAAGCCTTGAAAATTCAGGCAGAGATAGCAGAGGAAGATGCTCCTTTTGATGTTTCTCCACTCACTGGAAAGGCAAGCACAGACAGCGGGAAA GATCAAAACCACCCTCTTGCTTCAACCATTCCATTAGAAGATTGGATAAAGAAGTACGGCTTAGCTTCTCCAGGGGACCAAGCAAACCATTTCATCATGG CTGTGGTTGTCCAGCTACGGGATCCTATAAGGCGATACGAGGCAGTTGGAGGTCCTGTAGTTGCAGTAGTTCATGCAACACAAGCTGACATCGAAGAGAA CAACTACAACGAGGAAAAGAAATTCAAAGTAACGAGTTTGCACATTGGAGGTATGAAGGGAAAGTCAGGAAGAAAGAGGAATCTGTGGGATTCGGAGAGG CAAAGGCTAACGGCAACGCAGTGGCTGGTGGCATATGGGCTTGGAAAGGCAGGGAAAAAGGGAAAACATGTGCTGTCAAAAGGGAAAGATTTGTTATGGA GCATTTCCTCAAGAATTATGGCTGATATGTGGCTCAAACCTATGAGAAATCCTGATGTGAAGTTTACCAGGTAA
AA sequence Show only first row Show all	>Potri.005G255500.1 pacid=42805018 polypeptide=Potri.005G255500.1.p locus=Potri.005G255500 ID=Potri.005G255500.1.v4.1 annot-version=v4.1 MATDRRNSNTQLLEELEELSQSLYQTHTSSARRTASLVLPRNSVPSITSADEVTTAKIDEKSSSRPRSRRMSLSPWRSRPKPDEETERKTTNINQPGIKK LDDISSATERKGIWNWKPIRAISHIGMQKLSCLFSVEVVAVQGLPASMNGLRLSVCVRKKETKDGAVNTMPSRVSQGAGDFEETLFIKCHVYCTPGNGKQ LKFEQRPFFIYVFAVDAEALDFGRTSVDLSELIQESIEKSQEGTRVRQWDTSFSLSGKAKGGELVLKLGFQIMEKEGGIDIYSQAEVSKTTKFKNFSSSL GRKQSKSSFSVSSPRMTLRSETWTPSQTKPAADIQGMDDLNLDETAPVPSPPPSIQKSEEPEQKIEDLDLPDFEIVDKGVEIQDKEDSGDGESEENVEEK SQSSEVVKEIVHNQVHLTRLTELDSIAEQIKVLESMMGEEKTAKTDDETESQKLDADEETVTKEFLQMLEDEETDSFKFNQPEIPTLHLDGGDDSTEAES KVYLSELGKGLGCVVQTRDGGYLAATNPLDTIVSRKDTPKLAMQLSKPLVLQSDKSMNGFELFQRMASIGFEELCSQILSLMPLDELLGKTAEQIAFEGI ASAIIQGRNKEGASSSAARTIAAVKTMATAMSTGRKERISTGIWNVNENPLTAEEVLAFSLQKIEVMAIEALKIQAEIAEEDAPFDVSPLTGKASTDSGK DQNHPLASTIPLEDWIKKYGLASPGDQANHFIMAVVVQLRDPIRRYEAVGGPVVAVVHATQADIEENNYNEEKKFKVTSLHIGGMKGKSGRKRNLWDSER QRLTATQWLVAYGLGKAGKKGKHVLSKGKDLLWSISSRIMADMWLKPMRNPDVKFTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	0	1
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.001G301100 [exp]	2.23	0.9784	SEP1.1
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	3.16	0.9741
AT1G78995			unknown protein		Potri.007G003600 [exp]	4.24	0.9738
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	4.89	0.9724
AT1G27480			alpha/beta-Hydrolases superfam...		Potri.014G014400 [exp]	5.09	0.9603	Pt-LCAT1.2
AT5G52190			Sugar isomerase (SIS) family p...		Potri.015G140600 [exp]	5.19	0.9651
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	7.74	0.9617
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.001G214700 [exp]	8.83	0.9532
AT5G26770			unknown protein		Potri.005G003600 [exp]	9.59	0.9264
AT5G52420			unknown protein		Potri.015G146400 [exp]	10.00	0.9626

Compare expression of checked genes

Potri.005G255500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.