Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76420 295 / 6e-98 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G53950 253 / 7e-81 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G24430 247 / 2e-79 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G15170 244 / 2e-78 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G18270 237 / 2e-75 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT5G61430 237 / 2e-75 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT3G18400 236 / 4e-75 NAC ANAC058 NAC domain containing protein 58 (.1) AT3G04060 235 / 1e-74 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G07680 233 / 3e-74 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G39610 229 / 4e-73 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005800 [exp] 603 / 0 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G115400 [exp] 254 / 7e-82 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G396300 [exp] 247 / 1e-79 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G003800 [exp] 244 / 5e-78 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.019G031600 [exp] 245 / 9e-78 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.006G277000 [exp] 241 / 6e-77 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.012G056300 [exp] 238 / 3e-76 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G046800 [exp] 238 / 4e-76 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.013G054200 [exp] 239 / 2e-75 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013205 [exp] 288 / 2e-94 AT1G76420 270 / 4e-88 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030723 [exp] 263 / 1e-84 AT1G76420 243 / 1e-77 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10005537 [exp] 257 / 2e-83 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041924 [exp] 237 / 3e-77 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020165 [exp] 241 / 6e-76 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009029 [exp] 237 / 5e-75 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10026966 [exp] 237 / 7e-75 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009669 [exp] 235 / 2e-74 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10003435 [exp] 231 / 1e-72 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10001648 [exp] 230 / 1e-72 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G255900.1 pacid=42804547 polypeptide=Potri.005G255900.1.p locus=Potri.005G255900 ID=Potri.005G255900.1.v4.1 annot-version=v4.1 ATGTTGGCAATGGAAGAGCTACTGTGTGAACTAAGTAGTGAAGGGCTAAACGACCAAGGGTTGCCACCAGGGTTTAGATTCCACCCTACAGATGAAGAGC TTATAACCTTTTATTTGGCTTCAAAGGTGTTTAATGGTAGTTTTTGTGGCGTAGAAATTGCTGAGGTTGACCTTAACAGATGTGAACCCTGGGAGCTTCC AGATGTGGCAAAGATGGGAGAAAGAGAATGGTACTTTTTCAGCTTGAGAGACAGGAAGTACCCAACAGGGCTGAGAACAAATCGGGCCACCGGAGCCGGC TACTGGAAGGCCACGGGCAAAGACAGAGAAGTATACAGTGCTTCCACTGGTGCTTTACTTGGCATGAAAAAGACCCTTGTTTTCTACAAAGGGAGAGCTC CTAGAGGTGAAAAAACCAAGTGGGTCATGCACGAGTACCGCCTGGACGGTGACTTCTCCTACCGTCACACTTGTAAGGATGAATGGGTGATTTGCAGGAT ATTTCACAAAAAAGGAGAGAAGAAAGATGTGTTTCTCCAAGCAGAACAAGGCTACCACCTCTGGGAAGTCTATTCACCAGCCAATTCAGGTTCATTGCCT CCATTGCTTGATGCATCAGCATCGTTATTTGATCAATGTCAATCCAAGAACAAAGTAATTGATGCCCTCCAAAACGCTTTTCTGATTCCTGAACACCAAG AAAATGACCTCAAAAGCATACCAAACCCTCTTGTTTCCCAATCCCATGTCCTGTCAATAAATGGCTTGCAGCCCTCCTTTTCACCCACTCCCATCTCCAT CAACAGCACAGCCACATCAACCAATAAAAACACGAACACGGACAACAACAACCAGTCACCATCGATGCTCTTCAAGTCCATCCTCTCATATCAAGATTGC ACATTGAAGACTGAAGCAAGCTTTTCCCATGATGCTACCTTCGGTGGTGTGGATAAGATCACTCACCCACATCCATACCTAAACAATCCCTTGTTTTTTG AGATGGATTGTAGTAGTAATGTTCTGGGGTTCTCAGGATCTGCTTCTGCTGCAGATACCATAATCCATGACATGTCCACTTCAATTGGTTTTAGCAGAGC CGGCTTGCAGATGATGTTAGATACTCCCATCAGACTGCCTGGAGAATCTTGGCCATTGGATCCTTAA
AA sequence Show only first row Show all	>Potri.005G255900.1 pacid=42804547 polypeptide=Potri.005G255900.1.p locus=Potri.005G255900 ID=Potri.005G255900.1.v4.1 annot-version=v4.1 MLAMEELLCELSSEGLNDQGLPPGFRFHPTDEELITFYLASKVFNGSFCGVEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAG YWKATGKDREVYSASTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKDEWVICRIFHKKGEKKDVFLQAEQGYHLWEVYSPANSGSLP PLLDASASLFDQCQSKNKVIDALQNAFLIPEHQENDLKSIPNPLVSQSHVLSINGLQPSFSPTPISINSTATSTNKNTNTDNNNQSPSMLFKSILSYQDC TLKTEASFSHDATFGGVDKITHPHPYLNNPLFFEMDCSSNVLGFSGSASAADTIIHDMSTSIGFSRAGLQMMLDTPIRLPGESWPLDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.005G255900 [exp]	0	1
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.015G104200 [exp]	1.41	0.9035
AT2G46150			Late embryogenesis abundant (L...		Potri.014G090900 [exp]	11.22	0.8554
AT3G04890			Uncharacterized conserved prot...		Potri.013G037050 [exp]	26.98	0.8012
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.008G189400 [exp]	28.14	0.8493
AT4G23140		RLK5, CRK6	cysteine-rich RLK (RECEPTOR-li...		Potri.004G028350 [exp]	31.62	0.7364
					Potri.006G162650 [exp]	36.00	0.8373
					Potri.014G018801 [exp]	42.98	0.7956
AT1G08845			Ribosomal L18p/L5e family prot...		Potri.013G029300 [exp]	43.05	0.8226
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G250900 [exp]	47.95	0.8013
AT4G24700			unknown protein		Potri.012G086000 [exp]	70.68	0.8089

Compare expression of checked genes

Potri.005G255900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.