Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	11
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76430 613 / 0 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 571 / 0 PHT1;8 phosphate transporter 1;8 (.1) AT5G43360 474 / 1e-163 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43350 474 / 2e-163 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT2G32830 474 / 3e-163 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT2G38940 474 / 4e-163 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT3G54700 467 / 2e-160 PHT1;7 phosphate transporter 1;7 (.1) AT5G43340 457 / 5e-157 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT5G43370 453 / 3e-155 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT4G08878 211 / 3e-64 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005500 [exp] 849 / 0 AT1G76430 572 / 0.0 phosphate transporter 1;9 (.1) Potri.010G071500 [exp] 491 / 5e-170 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 483 / 5e-167 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.005G223600 [exp] 479 / 2e-165 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 472 / 2e-162 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G071600 [exp] 463 / 5e-158 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 458 / 5e-157 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 452 / 2e-154 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 449 / 2e-153 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016042 [exp] 535 / 0 AT1G76430 542 / 0.0 phosphate transporter 1;9 (.1) Lus10014754 [exp] 496 / 6e-172 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10011826 [exp] 488 / 2e-168 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 481 / 2e-165 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10003560 [exp] 469 / 3e-161 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 469 / 3e-161 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10025163 [exp] 446 / 9e-154 AT1G76430 431 / 5e-148 phosphate transporter 1;9 (.1) Lus10016635 [exp] 446 / 5e-152 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10012860 [exp] 435 / 9e-148 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 433 / 9e-147 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.005G256100.1 pacid=42803068 polypeptide=Potri.005G256100.1.p locus=Potri.005G256100 ID=Potri.005G256100.1.v4.1 annot-version=v4.1 ATGGGGTTAAGAGTACTTTCTGCCCTTGATGGAGCAAAAATACAGTATTATCACTTCAAAGCCATAATAATAGCAGGCATGGGCCTCTTCACTGATGCCT ATGATCTCTTTTGCATCCCTCCAATCATGAAACTTCTTGGCCGTGTATACTACGAGGACAATCCTCATGACAAATACCAAATCCCACAAGTTGTGCTTGC TACCATGTTAGGCACAGTCCTGCTTGGTACAGTGATTGGTCAACTCGTATTTGGTATACTTGGTGACCGAATGGGAAGGCGCCGCGTATACGGTATCTCA CTGATGCTCATGGTCCTCAGCTCGGTTGGGTGTGGTTTCTCCATTTGCAGGACCAAAACCTGCGTTCTTGTCAGTTTGGGGTTTTTCAGGTTTTTTCTGG GACTTGGGATTGGTGGAGACTACCCTTTGTCAGCTACAATCATGTCTGAATTTGCTAATAAGAATACACGAGGCGCTTTCATAGCGGCTGTGTTTTCTAT GCAAGGGCTTGGAATTTTGGCTAGTTCCATGGTGACTATGGTGGTGTCTAAGACTTTTGAGGCTGCTGCTTCCAAGAAATTGTCACATGATCATACACCA GAAGATGCTGACATTGCTTGGAGGTTGATTCTGATGCTTGGTGCTGTTCCTGCTGGACTCACTTATTATTGGCGCATGATGATGCCTGAAACGGCCAGGT ACACAGCTTTGGTGGAGAATAATGCCTTGCAAGCAGCAAGGGACATGGAGAAGGTCTTGGATGTTTCAATTTTCCAAATAGCAGAAGATGATCCAATGCA GCAGCCACAAAATCCATCATCTTATCCTCTAATCTCGATGCAGTTCCTCCGTGTCCATGGCATTGATCTCTTCTCCTGTGCCACCACATGGTTACTTCTT GACATTGCTTTTTATAGCAGCAGCCTCTTCCAGTCCCAGATTTACAGGAAGAATCTTCACTTGCAAGACACAAATGTTTATAATGAAGCTTTCAAAGTTG CTTTCTTCCAAACCATGGTAGCAATTGCTGCTACAATTCCAGGGTATTGGTTCACAGTCTATTTTATTGATCGCATCGGAAGAAAAAAAATCCAAATGAT GGGATTTCTCTGCATGGGTATAGTGTATTTTGCAATAGGGATACCATACCATTACTGGCGTACACATGAAAATAAAGGTTTCCTAGTCCTTTATGGTCTT ACATTCTTCTTTGCAAATTTTGGACCCAACACTACAACTTTCATCGTGCCAGCAGAACTTTTTCCAGCTAGATTTAGATCAACATGCCATGGAATTTCTG GGGCAATGGGGAAGGTGGGTGCTTTCTTTGGGACATTAGGATTTCTGTGGGCTACAAAAAATAATGATCCAAGAATCAAAGCAATGAGAATTGCTTTAGT GAGTTTGGGTGGGATTTGTCTCTTGGGAATGGCTGTGACATACTTGTTCACGAGAGAAACTAATGGAAGATCATTAGAGGAGAATGAGAAGGAGAAGGAA AACAGTGAGCTGCGCTTCTTCAGATGTTTGATGGATGCTGATCGCCACCCAAAGACTTCTGTCCCTGAAGAAGAGATTGCTTTGTGA
AA sequence Show only first row Show all	>Potri.005G256100.1 pacid=42803068 polypeptide=Potri.005G256100.1.p locus=Potri.005G256100 ID=Potri.005G256100.1.v4.1 annot-version=v4.1 MGLRVLSALDGAKIQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRVYYEDNPHDKYQIPQVVLATMLGTVLLGTVIGQLVFGILGDRMGRRRVYGIS LMLMVLSSVGCGFSICRTKTCVLVSLGFFRFFLGLGIGGDYPLSATIMSEFANKNTRGAFIAAVFSMQGLGILASSMVTMVVSKTFEAAASKKLSHDHTP EDADIAWRLILMLGAVPAGLTYYWRMMMPETARYTALVENNALQAARDMEKVLDVSIFQIAEDDPMQQPQNPSSYPLISMQFLRVHGIDLFSCATTWLLL DIAFYSSSLFQSQIYRKNLHLQDTNVYNEAFKVAFFQTMVAIAATIPGYWFTVYFIDRIGRKKIQMMGFLCMGIVYFAIGIPYHYWRTHENKGFLVLYGL TFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAMGKVGAFFGTLGFLWATKNNDPRIKAMRIALVSLGGICLLGMAVTYLFTRETNGRSLEENEKEKE NSELRFFRCLMDADRHPKTSVPEEEIAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	0	1	11
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018200 [exp]	1.73	0.9703
AT4G23880			unknown protein		Potri.003G140266 [exp]	2.82	0.9709
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	3.16	0.9689	Pt-IFS1.42
AT4G23880			unknown protein		Potri.003G140233 [exp]	4.00	0.9690
AT2G46600			Calcium-binding EF-hand family...		Potri.014G101700 [exp]	4.24	0.9657
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	5.65	0.9666
AT4G23880			unknown protein		Potri.003G140200 [exp]	5.91	0.9674
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268400 [exp]	6.63	0.9629
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028500 [exp]	6.70	0.9537
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.007G066300 [exp]	7.34	0.9414

Compare expression of checked genes

Potri.005G256100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.