Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76450 274 / 9e-93 Photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030719 [exp] 268 / 8e-90 AT1G76450 283 / 2e-96 Photosystem II reaction center PsbP family protein (.1) Lus10013201 [exp] 254 / 4e-77 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.005G256600.2 pacid=42803861 polypeptide=Potri.005G256600.2.p locus=Potri.005G256600 ID=Potri.005G256600.2.v4.1 annot-version=v4.1 ATGGCTTGTATTTCTTCACTGAACTCTCTGTCTCAACGTCCTTTCAATCCCAATTTCTCATCTTTCTCTTCCACCAAGCCGAGTCTTTACATTCTAAAAT CCAAGCTTAACACTAACATTCCTGCTCCTTCAACTCCTTTAAGCTGCAGCAGACGCAGAAACCAACATCAACATGTTCTCTGCTGCAACAACAACTACAA ACAAGAAGAAGAACTGCTTTTTTGCCTTGGAGAAGTACCACGTGGAGCTGGAACTAAAAGAAGAGAAGCTTTATTCAATATGGTATTTACTGCTTTTACT TTCCCTGCAATTGCCTCTACTGCATTGGCAGCCACAGGCGTGGCAGAGGATTCACGTGTTTATACCGATGATGCGAACAAGTTTAAGATATCTATTCCCC AAGGCTGGCAAGTAGGTGCAGGAGAACCAAGTGGATACAAATCCGTCACTGCTTTCTATCCAGAAGAAGCTTCTAATTCAAGTGGTATTTTCAGCGTTGT GATCACCGGGCTTGGTCCAGATTTTACTAGATTGGAATCATTTGGCAAAGTTGATGCCTTTGCTGAGACTCTGGTGGGTGGATTGGACAGGAGCTGGCAG AGGCCCCCGGGCGTGGCAGCAAAACTTATAGACTCTAAAGCTGCTAATGGGCTTTACTACATCGAGTATACGCTGCAAAATCCAGGCGAAAGTCGCAGAC ATTTGCTTTCAGCACTTGGAGTTACATTCAATGGTTGGTACAACAGACTATATACGGTGACAGGGCAGTTTGTCGATGAAGAATCAGAGAAATTCGGCAC CGAGATCAGGAAGGCTGTTTCGTCCTTCAGGTTCATTTGA
AA sequence Show only first row Show all	>Potri.005G256600.2 pacid=42803861 polypeptide=Potri.005G256600.2.p locus=Potri.005G256600 ID=Potri.005G256600.2.v4.1 annot-version=v4.1 MACISSLNSLSQRPFNPNFSSFSSTKPSLYILKSKLNTNIPAPSTPLSCSRRRNQHQHVLCCNNNYKQEEELLFCLGEVPRGAGTKRREALFNMVFTAFT FPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPSGYKSVTAFYPEEASNSSGIFSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQ RPPGVAAKLIDSKAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFGTEIRKAVSSFRFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76450			Photosystem II reaction center...		Potri.005G256600 [exp]	0	1
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Potri.005G161900 [exp]	3.60	0.9596
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G109000 [exp]	6.32	0.9451
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	6.92	0.9559
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	9.16	0.9541
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	13.41	0.9438	Pt-PGK1.1
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.009G037000 [exp]	16.61	0.9347
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.015G104500 [exp]	22.29	0.9330
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.006G127400 [exp]	23.68	0.8594
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	24.00	0.9321
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	26.26	0.9228

Compare expression of checked genes

Potri.005G256600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.