Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76500 192 / 2e-59 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT2G45430 183 / 7e-56 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 182 / 2e-55 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT1G20900 179 / 4e-54 AT-hook ORE7, AHL27, ESC ORESARA 7, ESCAROLA, AT-hook motif nuclear-localized protein 27, Predicted AT-hook DNA-binding family protein (.1) AT4G22810 179 / 4e-54 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G42940 171 / 7e-52 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G35270 171 / 2e-51 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G35390 170 / 4e-51 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1) AT4G14465 163 / 2e-48 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 162 / 5e-48 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003800 [exp] 300 / 6e-102 AT1G76500 186 / 6e-57 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) Potri.002G149300 [exp] 189 / 2e-58 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.014G070800 [exp] 186 / 2e-57 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.010G074201 [exp] 184 / 7e-57 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.001G115200 [exp] 182 / 2e-55 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 181 / 4e-55 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.004G208600 [exp] 176 / 3e-53 AT2G45430 166 / 4e-49 AT-hook motif nuclear-localized protein 22 (.1) Potri.001G142800 [exp] 176 / 4e-53 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.002G059400 [exp] 172 / 4e-52 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020763 [exp] 180 / 3e-55 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 172 / 1e-51 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 170 / 4e-51 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10006577 [exp] 168 / 3e-50 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10031460 [exp] 160 / 2e-48 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10000519 [exp] 154 / 8e-45 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 150 / 8e-45 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10042551 [exp] 150 / 9e-44 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10002711 [exp] 150 / 5e-43 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10022010 [exp] 143 / 4e-41 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.005G257200.1 pacid=42803965 polypeptide=Potri.005G257200.1.p locus=Potri.005G257200 ID=Potri.005G257200.1.v4.1 annot-version=v4.1 ATGGCTGGTTTTGAAGGTAATAATTCTCGATACGTTCATGGTCAAAATCACAACAACCTTCTCAGACCTGAACTTCATCTGATTCAAAGACCTTCATCCA TTCCTTCCTCTGATTCTAGAGACAACAACAATACCCCATCACCACCAGATCATGCCAACCAAACTGCTCATCACCATCCTGATAGTAGTGCTACCACTAG CTCTGGCGGCGGCACCAATCCGAATCGCCGTCCTAGAGGTCGTCCTGCTGGTTCCAAGAACAAACCGAAGCCACCCATTATTGTAACCCGGGACAGCCCT AATGCCCTCCGATCCCATGTGATTGAGATCTCTAATGGTGCTGATATAGTGGAAAGCGTGTCCACTTATGCGAGGAAAAGAGGAAGAGGAGTTTGTGTTC TTAGTGGAAGTGGGACAGTTGCTAATGTTACTCTAAGGCAACCCGCTTCTCCTGCAGGAAGCGTGCTTACTTTGCACGGAAGGTTTGAGATCCTTTCGCT ATCTGGAACTGTGCTTCCGCCACCTGCGCCACCTGGGGCGGGAGGGCTGTCCATATTTTTGTCCGGTGGACAAGGACAAGTTGTTGGAGGGAATGTTGTG GGGCCTTTGATGGCTGCAGGTCCAGTGGTTTTGATGGCTGCATCTTTTGCTAATGCAGTATTTGAGCGTTTGCCTTTGGATGATCAGGAGGAAGCTGGGG CGGTGCAGGTTCAGCCCACAGCTTCTCAGTCTTCGGGTGTGACTGGAAGTGGTGGACAGATGGGCGATGGCGGAGGAGGCAGCGGTACTGGAGGAGCTGG TAGTGGTTTTTTTAATATGGCCGGAGGAGCTCATCACGGGAATTATCCATTTTCAGGTGATTTGTTTGGACCATGGGGTGGAAGTGCTGCCAGGCCTCCA TTTTAA
AA sequence Show only first row Show all	>Potri.005G257200.1 pacid=42803965 polypeptide=Potri.005G257200.1.p locus=Potri.005G257200 ID=Potri.005G257200.1.v4.1 annot-version=v4.1 MAGFEGNNSRYVHGQNHNNLLRPELHLIQRPSSIPSSDSRDNNNTPSPPDHANQTAHHHPDSSATTSSGGGTNPNRRPRGRPAGSKNKPKPPIIVTRDSP NALRSHVIEISNGADIVESVSTYARKRGRGVCVLSGSGTVANVTLRQPASPAGSVLTLHGRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGNVV GPLMAAGPVVLMAASFANAVFERLPLDDQEEAGAVQVQPTASQSSGVTGSGGQMGDGGGGSGTGGAGSGFFNMAGGAHHGNYPFSGDLFGPWGGSAARPP F

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	0	1
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	1.00	0.9797
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	3.46	0.9636
AT2G22790			unknown protein		Potri.007G008900 [exp]	6.32	0.9493
AT5G04885			Glycosyl hydrolase family prot...		Potri.005G059200 [exp]	7.68	0.9027
					Potri.014G069900 [exp]	8.12	0.9333
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	9.16	0.9567
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	11.40	0.9439
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	11.53	0.9421
AT5G62180		ATCXE20	carboxyesterase 20 (.1)		Potri.015G137100 [exp]	11.83	0.8988	Pt-EST.1
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.013G134433 [exp]	12.00	0.8975

Compare expression of checked genes

Potri.005G257200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.