Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76510 221 / 1e-68 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 214 / 1e-66 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT2G17410 197 / 3e-57 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76110 47 / 7e-06 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003700 [exp] 481 / 1e-170 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.004G208900 [exp] 216 / 1e-65 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 177 / 2e-51 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 177 / 3e-51 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016045 [exp] 226 / 1e-70 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10022981 [exp] 182 / 2e-52 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10001618 [exp] 181 / 3e-52 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10013852 [exp] 118 / 1e-29 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10025165 [exp] 49 / 3e-06 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10014762 [exp] 45 / 6e-05 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10021228 [exp] 45 / 7e-05 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10036373 [exp] 42 / 0.0007 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G257300.3 pacid=42803827 polypeptide=Potri.005G257300.3.p locus=Potri.005G257300 ID=Potri.005G257300.3.v4.1 annot-version=v4.1 ATGAAAGATAGTGAAATGGTTGCTGTGCAAGACTTGCCGGGAGACTCGGATGCTAACAAGCCTTCTGATGCCACTGTTAAAGAGCAAGAAGAAACTGCTG ATGTTTCGGAGGATCAAGAGCCGAATGAAAATAGGCAGGCATCAGTTGCTGACGATGACAACACTGTGAGTTTGGCAACTGATGTTCCTATGACTGACAC TACAGCTTTGCCTGATGATGGGAAAACTGCTACGGATGAAAATATTAATCGGCGAGTGGTGGAAGAGAAAACTGATGGAGATGATGGCTCCTCTGTTCAA AACCAGCCACAAACGGCTACTCCATCTACCCAAAGGAGGTGCTCAACTCCTAGAACAAAGCTTGATAGTGCGGCAAAGTCCAAAAATGTATGGACTGATA TGAAGATGGGGGAGACTGATGTTGCCGGGACCCTAGAGGAGCAAGCTGCATTCATGAAGGACCTGGAGATTTTTTATAAGCAGAATATCATGGATTTCAA ACCCCCTAAGTTTTACGGAGAGCCATTAAACTGCCTGAAGTTATGGAGGTCTGTGATCAAACTGGGTGGCTATGAAGTGGTTACCGCAAACAAGTTGTGG CGGCAAGTGGGAGAGTCTTTCCACCCTCCCAAGACTTGCACAACGGTGTCTTGGACATTCCGCATTTTCTATGAGAAGGCAATTCTGGAATGTGAAAAGA ATAAGAAGGAAACTGGTGAGCTCCAACTTCCCAGTCCACCCCTGCATCAGGCTACCAGTGTCGAAAAGGAGACAAGAGGGTGCCAAGCAACTGGATCAGG CAGGGCAAGAAGGGATGCTGCTGCTCGTGCTATGCAGGGTTGGCATGCTCAGCGTCATCTTGGACATGGTGAGGTCAAGAGCTTGAATTTTTCAAGACGT GAAAAGCCTCACAAAATTTTCGGTACAATCTCTAGAATGAAGATCTTTCCAATTGGCAGGTGTATACATTTTTATTTTGATCTGGTTTGTTGA
AA sequence Show only first row Show all	>Potri.005G257300.3 pacid=42803827 polypeptide=Potri.005G257300.3.p locus=Potri.005G257300 ID=Potri.005G257300.3.v4.1 annot-version=v4.1 MKDSEMVAVQDLPGDSDANKPSDATVKEQEETADVSEDQEPNENRQASVADDDNTVSLATDVPMTDTTALPDDGKTATDENINRRVVEEKTDGDDGSSVQ NQPQTATPSTQRRCSTPRTKLDSAAKSKNVWTDMKMGETDVAGTLEEQAAFMKDLEIFYKQNIMDFKPPKFYGEPLNCLKLWRSVIKLGGYEVVTANKLW RQVGESFHPPKTCTTVSWTFRIFYEKAILECEKNKKETGELQLPSPPLHQATSVEKETRGCQATGSGRARRDAAARAMQGWHAQRHLGHGEVKSLNFSRR EKPHKIFGTISRMKIFPIGRCIHFYFDLVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	0	1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	3.00	0.7700
AT5G39590			TLD-domain containing nucleola...		Potri.002G024966 [exp]	3.16	0.8240
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	3.74	0.8178	Pt-MRP5.2
AT2G38695			unknown protein		Potri.003G190101 [exp]	3.87	0.7472
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.016G098850 [exp]	4.00	0.7974
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	8.36	0.7938
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	12.64	0.7310
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.005G242100 [exp]	13.07	0.6514
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	13.22	0.6925
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094266 [exp]	13.26	0.7678

Compare expression of checked genes

Potri.005G257300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.